Experiment: hydrous ferric oxide electron acceptor
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SO0085 and SO0086 are separated by 367 nucleotides SO0086 and SO0087 are separated by 65 nucleotides SO0087 and SO0088 are separated by 194 nucleotides
SO0085: SO0085 - hypothetical protein (NCBI ptt file), at 96,204 to 96,626
SO0085
SO0086: SO0086 - hypothetical protein (NCBI ptt file), at 96,994 to 97,095
SO0086
SO0087: SO0087 - hypothetical protein (NCBI ptt file), at 97,161 to 97,721
SO0087
SO0088: SO0088 - hypothetical protein (NCBI ptt file), at 97,916 to 98,515
SO0088
Position (kb) 96
97
98 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 96.051 kb on - strand at 96.066 kb on - strand at 96.085 kb on - strand at 96.150 kb on + strand at 96.171 kb on + strand at 96.179 kb on - strand at 96.186 kb on + strand at 96.186 kb on + strand at 96.187 kb on - strand at 96.275 kb on + strand, within SO0085 at 96.280 kb on - strand, within SO0085 at 96.285 kb on + strand, within SO0085 at 96.428 kb on + strand, within SO0085 at 96.442 kb on + strand, within SO0085 at 96.451 kb on - strand, within SO0085 at 96.451 kb on - strand, within SO0085 at 96.451 kb on - strand, within SO0085 at 96.493 kb on - strand, within SO0085 at 96.533 kb on + strand, within SO0085 at 96.534 kb on + strand, within SO0085 at 96.549 kb on - strand, within SO0085 at 96.556 kb on + strand, within SO0085 at 96.603 kb on + strand at 96.604 kb on + strand at 96.604 kb on + strand at 96.604 kb on + strand at 96.612 kb on - strand at 96.612 kb on - strand at 96.614 kb on + strand at 96.624 kb on - strand at 96.657 kb on + strand at 96.657 kb on + strand at 96.657 kb on + strand at 96.665 kb on - strand at 96.665 kb on - strand at 96.665 kb on - strand at 96.756 kb on - strand at 96.758 kb on - strand at 96.768 kb on + strand at 96.979 kb on + strand at 96.980 kb on - strand at 97.047 kb on + strand, within SO0086 at 97.047 kb on + strand, within SO0086 at 97.138 kb on - strand at 97.141 kb on - strand at 97.158 kb on - strand at 97.196 kb on + strand at 97.205 kb on + strand at 97.384 kb on + strand, within SO0087 at 97.385 kb on - strand, within SO0087 at 97.392 kb on + strand, within SO0087 at 97.423 kb on + strand, within SO0087 at 97.460 kb on + strand, within SO0087 at 97.460 kb on + strand, within SO0087 at 97.460 kb on + strand, within SO0087 at 97.468 kb on - strand, within SO0087 at 97.468 kb on - strand, within SO0087 at 97.468 kb on - strand, within SO0087 at 97.498 kb on + strand, within SO0087 at 97.579 kb on - strand, within SO0087 at 97.640 kb on + strand, within SO0087 at 97.640 kb on + strand, within SO0087 at 97.648 kb on - strand, within SO0087 at 97.648 kb on - strand, within SO0087 at 97.659 kb on + strand, within SO0087 at 97.673 kb on + strand at 97.674 kb on - strand at 97.674 kb on - strand at 97.678 kb on + strand at 97.692 kb on - strand at 97.701 kb on - strand at 97.747 kb on + strand at 97.755 kb on - strand at 97.808 kb on + strand at 97.821 kb on - strand at 97.834 kb on + strand at 97.847 kb on - strand at 97.857 kb on + strand at 97.934 kb on - strand at 97.947 kb on - strand at 97.961 kb on + strand at 98.007 kb on - strand, within SO0088 at 98.021 kb on - strand, within SO0088 at 98.044 kb on + strand, within SO0088 at 98.044 kb on + strand, within SO0088
Per-strain Table
Position Strand Gene LocusTag Fraction hydrous ferric oxide electron acceptor remove 96,051 - +0.5 96,066 - +0.0 96,085 - +0.7 96,150 + +1.5 96,171 + -0.3 96,179 - -0.2 96,186 + +0.9 96,186 + -1.5 96,187 - +0.8 96,275 + SO0085 0.17 -0.7 96,280 - SO0085 0.18 -0.4 96,285 + SO0085 0.19 -0.2 96,428 + SO0085 0.53 +1.1 96,442 + SO0085 0.56 -0.5 96,451 - SO0085 0.58 -2.3 96,451 - SO0085 0.58 -1.0 96,451 - SO0085 0.58 -1.1 96,493 - SO0085 0.68 -0.4 96,533 + SO0085 0.78 +0.6 96,534 + SO0085 0.78 -0.0 96,549 - SO0085 0.82 +1.0 96,556 + SO0085 0.83 -0.7 96,603 + +1.0 96,604 + +0.7 96,604 + -0.2 96,604 + -0.0 96,612 - +2.4 96,612 - -3.4 96,614 + -2.3 96,624 - -0.5 96,657 + -0.5 96,657 + +1.9 96,657 + -0.3 96,665 - -1.3 96,665 - -0.3 96,665 - +0.6 96,756 - -0.3 96,758 - +1.0 96,768 + -2.1 96,979 + -0.7 96,980 - +2.5 97,047 + SO0086 0.52 -2.7 97,047 + SO0086 0.52 -0.8 97,138 - -0.0 97,141 - -1.2 97,158 - +0.2 97,196 + -1.6 97,205 + -2.6 97,384 + SO0087 0.40 +0.2 97,385 - SO0087 0.40 +1.7 97,392 + SO0087 0.41 +0.3 97,423 + SO0087 0.47 -0.6 97,460 + SO0087 0.53 +0.5 97,460 + SO0087 0.53 -0.6 97,460 + SO0087 0.53 -1.2 97,468 - SO0087 0.55 +0.5 97,468 - SO0087 0.55 +0.4 97,468 - SO0087 0.55 -0.6 97,498 + SO0087 0.60 +3.7 97,579 - SO0087 0.75 -2.1 97,640 + SO0087 0.85 -1.5 97,640 + SO0087 0.85 -0.6 97,648 - SO0087 0.87 -0.5 97,648 - SO0087 0.87 +0.2 97,659 + SO0087 0.89 +0.1 97,673 + +0.1 97,674 - +2.0 97,674 - -1.0 97,678 + -2.2 97,692 - +2.0 97,701 - -2.4 97,747 + -1.9 97,755 - -0.3 97,808 + -0.3 97,821 - -0.2 97,834 + +1.6 97,847 - +1.2 97,857 + +1.5 97,934 - -0.6 97,947 - -0.0 97,961 + +0.7 98,007 - SO0088 0.15 +0.7 98,021 - SO0088 0.17 -1.2 98,044 + SO0088 0.21 +0.2 98,044 + SO0088 0.21 +0.7
Or see this region's nucleotide sequence