Experiment: KB with Fumarprotocetraric Acid 10 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_4472 and Psyr_4473 are separated by 103 nucleotides Psyr_4473 and Psyr_4474 are separated by 37 nucleotides Psyr_4474 and Psyr_4475 overlap by 4 nucleotides Psyr_4475 and Psyr_4476 overlap by 8 nucleotides
Psyr_4472: Psyr_4472 - lipoprotein, putative, at 5,332,630 to 5,333,154
_4472
Psyr_4473: Psyr_4473 - OmpW, at 5,333,258 to 5,333,944
_4473
Psyr_4474: Psyr_4474 - hypothetical protein, at 5,333,982 to 5,335,508
_4474
Psyr_4475: Psyr_4475 - NAD-dependent epimerase/dehydratase, at 5,335,505 to 5,336,434
_4475
Psyr_4476: Psyr_4476 - dTDP-4-dehydrorhamnose reductase, at 5,336,427 to 5,337,311
_4476
Position (kb) 5333
5334
5335
5336 Strain fitness (log2 ratio) -2
-1
0
1 at 5333.035 kb on + strand, within Psyr_4472 at 5333.153 kb on - strand at 5333.153 kb on - strand at 5333.222 kb on + strand at 5333.222 kb on + strand at 5333.222 kb on + strand at 5333.223 kb on - strand at 5333.231 kb on - strand at 5333.474 kb on + strand, within Psyr_4473 at 5333.475 kb on - strand, within Psyr_4473 at 5333.475 kb on - strand, within Psyr_4473 at 5333.475 kb on - strand, within Psyr_4473 at 5333.475 kb on - strand, within Psyr_4473 at 5333.530 kb on + strand, within Psyr_4473 at 5333.530 kb on + strand, within Psyr_4473 at 5333.616 kb on - strand, within Psyr_4473 at 5333.652 kb on - strand, within Psyr_4473 at 5333.672 kb on + strand, within Psyr_4473 at 5333.672 kb on + strand, within Psyr_4473 at 5333.672 kb on + strand, within Psyr_4473 at 5333.673 kb on - strand, within Psyr_4473 at 5333.673 kb on - strand, within Psyr_4473 at 5333.673 kb on - strand, within Psyr_4473 at 5333.780 kb on + strand, within Psyr_4473 at 5333.780 kb on + strand, within Psyr_4473 at 5333.780 kb on + strand, within Psyr_4473 at 5333.780 kb on + strand, within Psyr_4473 at 5333.780 kb on + strand, within Psyr_4473 at 5333.780 kb on + strand, within Psyr_4473 at 5333.780 kb on + strand, within Psyr_4473 at 5333.781 kb on - strand, within Psyr_4473 at 5333.781 kb on - strand, within Psyr_4473 at 5333.781 kb on - strand, within Psyr_4473 at 5333.781 kb on - strand, within Psyr_4473 at 5333.781 kb on - strand, within Psyr_4473 at 5333.800 kb on - strand, within Psyr_4473 at 5333.800 kb on - strand, within Psyr_4473 at 5333.800 kb on - strand, within Psyr_4473 at 5333.823 kb on - strand, within Psyr_4473 at 5333.823 kb on - strand, within Psyr_4473 at 5333.823 kb on - strand, within Psyr_4473 at 5333.915 kb on + strand at 5333.915 kb on + strand at 5333.915 kb on + strand at 5333.915 kb on + strand at 5333.915 kb on + strand at 5333.915 kb on + strand at 5333.915 kb on + strand at 5333.915 kb on + strand at 5333.915 kb on + strand at 5333.915 kb on + strand at 5333.915 kb on + strand at 5333.916 kb on - strand at 5333.916 kb on - strand at 5333.916 kb on - strand at 5333.916 kb on - strand at 5333.916 kb on - strand at 5333.916 kb on - strand at 5333.916 kb on - strand at 5333.916 kb on - strand at 5333.916 kb on - strand at 5333.916 kb on - strand at 5333.934 kb on - strand at 5334.041 kb on + strand at 5334.041 kb on + strand at 5334.042 kb on - strand at 5334.042 kb on - strand at 5334.085 kb on - strand at 5334.297 kb on - strand, within Psyr_4474 at 5335.499 kb on + strand at 5335.499 kb on + strand at 5335.499 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction KB with Fumarprotocetraric Acid 10 mM remove 5,333,035 + Psyr_4472 0.77 +0.0 5,333,153 - -0.5 5,333,153 - -0.3 5,333,222 + -2.4 5,333,222 + -0.3 5,333,222 + -0.3 5,333,223 - -0.5 5,333,231 - -0.2 5,333,474 + Psyr_4473 0.31 +0.5 5,333,475 - Psyr_4473 0.32 -0.1 5,333,475 - Psyr_4473 0.32 -0.1 5,333,475 - Psyr_4473 0.32 -0.5 5,333,475 - Psyr_4473 0.32 -1.0 5,333,530 + Psyr_4473 0.40 +0.3 5,333,530 + Psyr_4473 0.40 +0.3 5,333,616 - Psyr_4473 0.52 +0.6 5,333,652 - Psyr_4473 0.57 +0.9 5,333,672 + Psyr_4473 0.60 -2.2 5,333,672 + Psyr_4473 0.60 -0.9 5,333,672 + Psyr_4473 0.60 +0.3 5,333,673 - Psyr_4473 0.60 +1.6 5,333,673 - Psyr_4473 0.60 +0.0 5,333,673 - Psyr_4473 0.60 -0.0 5,333,780 + Psyr_4473 0.76 -1.5 5,333,780 + Psyr_4473 0.76 +0.4 5,333,780 + Psyr_4473 0.76 +0.3 5,333,780 + Psyr_4473 0.76 +0.4 5,333,780 + Psyr_4473 0.76 -0.2 5,333,780 + Psyr_4473 0.76 +0.4 5,333,780 + Psyr_4473 0.76 +0.7 5,333,781 - Psyr_4473 0.76 +0.3 5,333,781 - Psyr_4473 0.76 +0.3 5,333,781 - Psyr_4473 0.76 -0.4 5,333,781 - Psyr_4473 0.76 -0.7 5,333,781 - Psyr_4473 0.76 +0.6 5,333,800 - Psyr_4473 0.79 +0.1 5,333,800 - Psyr_4473 0.79 -0.9 5,333,800 - Psyr_4473 0.79 -0.2 5,333,823 - Psyr_4473 0.82 +0.1 5,333,823 - Psyr_4473 0.82 +1.1 5,333,823 - Psyr_4473 0.82 +0.5 5,333,915 + -0.1 5,333,915 + +1.5 5,333,915 + -0.0 5,333,915 + +0.9 5,333,915 + -0.1 5,333,915 + +1.3 5,333,915 + +0.9 5,333,915 + -0.8 5,333,915 + +0.2 5,333,915 + +0.6 5,333,915 + -1.1 5,333,916 - +0.3 5,333,916 - -0.2 5,333,916 - -0.9 5,333,916 - -0.5 5,333,916 - -0.6 5,333,916 - +0.3 5,333,916 - +0.1 5,333,916 - +0.7 5,333,916 - -0.4 5,333,916 - +0.9 5,333,934 - -0.3 5,334,041 + +0.8 5,334,041 + +0.7 5,334,042 - +0.1 5,334,042 - -1.1 5,334,085 - +0.4 5,334,297 - Psyr_4474 0.21 -2.2 5,335,499 + -0.5 5,335,499 + +0.0 5,335,499 + -0.3
Or see this region's nucleotide sequence