Strain Fitness in Pseudomonas putida KT2440 around PP_5185

Experiment: pH 4

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	pH 4
5,913,266	+		PP_5184	0.39	+0.3
5,913,266	+		PP_5184	0.39	+0.2
5,913,266	+				-1.5
5,913,290	+		PP_5184	0.41	+1.2
5,913,429	-		PP_5184	0.51	-1.2
5,913,436	-		PP_5184	0.51	+0.5
5,913,707	+		PP_5184	0.71	+0.2
5,913,708	-		PP_5184	0.71	-2.0
5,913,708	-		PP_5184	0.71	-0.9
5,913,914	+		PP_5184	0.86	-0.4
5,913,995	+				+2.3
5,914,010	+				-0.9
5,914,010	+				-0.8
5,914,099	+				+0.9
5,914,100	-				+1.9
5,914,100	-				-2.1
5,914,100	-				+0.6
5,914,191	+				+1.7
5,914,218	+				-0.5
5,914,218	+				-1.7
5,914,219	-				-1.5
5,914,263	-				+0.4
5,914,299	-				+0.3
5,914,305	-				-3.3
5,914,404	+		PP_5185	0.11	+0.3
5,914,405	-		PP_5185	0.11	-3.0
5,914,476	-		PP_5185	0.17	-2.7
5,914,781	+		PP_5185	0.40	-1.7
5,914,791	+		PP_5185	0.41	-2.9
5,914,865	-		PP_5185	0.46	-3.3
5,914,918	-		PP_5185	0.51	-2.0
5,914,995	+		PP_5185	0.57	-3.3
5,915,135	+		PP_5185	0.67	+0.3
5,915,310	+		PP_5185	0.81	-1.3
5,915,311	-		PP_5185	0.81	-2.7
5,915,313	+		PP_5185	0.81	-3.4
5,915,314	-		PP_5185	0.81	-3.8
5,915,314	-		PP_5185	0.81	-3.5
5,915,314	-		PP_5185	0.81	-2.0
5,915,314	-		PP_5185	0.81	-1.3
5,915,314	-		PP_5185	0.81	-0.7
5,915,330	+		PP_5185	0.82	+0.3
5,915,442	+				-3.7
5,915,443	-				+0.3
5,915,443	-				-4.3
5,915,443	-				-2.0
5,915,517	+				-2.3
5,915,517	+				-3.8
5,915,517	+				-1.3
5,915,517	+				-3.0
5,915,517	+				-2.6
5,915,519	+				-1.7
5,915,519	+				-3.5
5,915,519	+				-2.9
5,915,520	-				+1.3
5,915,520	-				-3.3
5,915,520	-				-4.2
5,915,549	+				-4.8
5,915,685	+				+0.3
5,915,686	-				-0.1
5,915,697	+				-2.5
5,915,697	+				-1.7
5,915,698	-				+1.1
5,915,698	-				-1.2
5,915,721	-				+2.3
5,915,832	+		PP_5186	0.13	+0.3
5,915,832	+		PP_5186	0.13	-0.4
5,915,833	-		PP_5186	0.13	+2.6
5,915,833	-		PP_5186	0.13	-1.9
5,915,897	+		PP_5186	0.19	+0.9
5,915,897	+		PP_5186	0.19	+0.9
5,915,956	-		PP_5186	0.24	+1.4
5,916,082	+		PP_5186	0.35	+1.3
5,916,083	-		PP_5186	0.35	+0.5
5,916,157	+		PP_5186	0.41	+3.5
5,916,157	+		PP_5186	0.41	-3.3
5,916,158	-		PP_5186	0.41	+0.9
5,916,158	-		PP_5186	0.41	+0.8
5,916,158	-		PP_5186	0.41	+0.2
5,916,158	-		PP_5186	0.41	+0.3
5,916,159	+		PP_5186	0.42	-0.3
5,916,159	+		PP_5186	0.42	+2.8
5,916,159	+		PP_5186	0.42	+1.7
5,916,159	+		PP_5186	0.42	+0.7
5,916,159	+		PP_5186	0.42	-3.5
5,916,160	-		PP_5186	0.42	+1.6
5,916,160	-		PP_5186	0.42	-1.3
5,916,160	-		PP_5186	0.42	+0.1