Experiment: pH 4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PP_5026 and PP_5027 are separated by 323 nucleotides PP_5027 and PP_5028 overlap by 4 nucleotides
PP_5026: PP_5026 - Glucans biosynthesis protein G, at 5,726,958 to 5,728,637
_5026
PP_5027: PP_5027 - D-tyrosyl-tRNA(Tyr) deacylase, at 5,728,961 to 5,729,398
_5027
PP_5028: PP_5028 - proline iminopeptidase, at 5,729,395 to 5,730,477
_5028
Position (kb) 5728
5729
5730 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 5728.001 kb on - strand, within PP_5026 at 5728.001 kb on - strand, within PP_5026 at 5728.036 kb on + strand, within PP_5026 at 5728.037 kb on - strand, within PP_5026 at 5728.037 kb on - strand, within PP_5026 at 5728.037 kb on - strand, within PP_5026 at 5728.156 kb on + strand, within PP_5026 at 5728.243 kb on + strand, within PP_5026 at 5728.264 kb on + strand, within PP_5026 at 5728.330 kb on + strand, within PP_5026 at 5728.330 kb on + strand, within PP_5026 at 5728.330 kb on + strand, within PP_5026 at 5728.405 kb on + strand, within PP_5026 at 5728.405 kb on + strand, within PP_5026 at 5728.406 kb on - strand, within PP_5026 at 5728.406 kb on - strand, within PP_5026 at 5728.650 kb on + strand at 5728.688 kb on + strand at 5728.787 kb on - strand at 5728.839 kb on + strand at 5728.839 kb on + strand at 5728.840 kb on - strand at 5728.840 kb on - strand at 5728.909 kb on + strand at 5728.909 kb on + strand at 5728.909 kb on + strand at 5728.910 kb on - strand at 5728.910 kb on - strand at 5728.910 kb on - strand at 5728.910 kb on - strand at 5728.910 kb on - strand at 5728.913 kb on + strand at 5728.918 kb on + strand at 5728.964 kb on + strand at 5728.965 kb on - strand at 5728.965 kb on - strand at 5728.975 kb on + strand at 5728.975 kb on + strand at 5729.039 kb on + strand, within PP_5027 at 5729.077 kb on - strand, within PP_5027 at 5729.177 kb on + strand, within PP_5027 at 5729.576 kb on + strand, within PP_5028 at 5729.669 kb on + strand, within PP_5028 at 5729.882 kb on + strand, within PP_5028 at 5729.882 kb on + strand, within PP_5028 at 5729.882 kb on + strand, within PP_5028 at 5729.882 kb on + strand, within PP_5028 at 5729.882 kb on + strand, within PP_5028 at 5729.883 kb on - strand, within PP_5028 at 5729.894 kb on + strand, within PP_5028 at 5729.894 kb on + strand, within PP_5028 at 5729.927 kb on + strand, within PP_5028 at 5730.064 kb on + strand, within PP_5028 at 5730.064 kb on + strand, within PP_5028 at 5730.185 kb on + strand, within PP_5028 at 5730.203 kb on + strand, within PP_5028 at 5730.203 kb on + strand, within PP_5028 at 5730.293 kb on + strand, within PP_5028 at 5730.293 kb on + strand, within PP_5028 at 5730.294 kb on - strand, within PP_5028 at 5730.294 kb on - strand, within PP_5028 at 5730.387 kb on + strand at 5730.387 kb on + strand at 5730.387 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction pH 4 remove 5,728,001 - PP_5026 0.62 -0.1 5,728,001 - PP_5026 0.62 -1.0 5,728,036 + PP_5026 0.64 -2.3 5,728,037 - PP_5026 0.64 -1.7 5,728,037 - PP_5026 0.64 +1.4 5,728,037 - PP_5026 0.64 -1.2 5,728,156 + PP_5026 0.71 +1.9 5,728,243 + PP_5026 0.76 +1.7 5,728,264 + PP_5026 0.78 -2.0 5,728,330 + PP_5026 0.82 -0.4 5,728,330 + PP_5026 0.82 -1.5 5,728,330 + PP_5026 0.82 -0.2 5,728,405 + PP_5026 0.86 +1.8 5,728,405 + PP_5026 0.86 +0.8 5,728,406 - PP_5026 0.86 +0.8 5,728,406 - PP_5026 0.86 +1.7 5,728,650 + +0.1 5,728,688 + +0.5 5,728,787 - -0.6 5,728,839 + -2.0 5,728,839 + +0.7 5,728,840 - -0.2 5,728,840 - -0.9 5,728,909 + -0.5 5,728,909 + +1.3 5,728,909 + +2.4 5,728,910 - -1.3 5,728,910 - +0.1 5,728,910 - +1.0 5,728,910 - +1.3 5,728,910 - +0.1 5,728,913 + -1.0 5,728,918 + -1.6 5,728,964 + +2.9 5,728,965 - -1.0 5,728,965 - -1.2 5,728,975 + -2.7 5,728,975 + +0.6 5,729,039 + PP_5027 0.18 -1.4 5,729,077 - PP_5027 0.26 -2.0 5,729,177 + PP_5027 0.49 -1.4 5,729,576 + PP_5028 0.17 +0.3 5,729,669 + PP_5028 0.25 +0.3 5,729,882 + PP_5028 0.45 +0.3 5,729,882 + PP_5028 0.45 -3.0 5,729,882 + PP_5028 0.45 +0.3 5,729,882 + PP_5028 0.45 +0.3 5,729,882 + PP_5028 0.45 +0.3 5,729,883 - PP_5028 0.45 +0.3 5,729,894 + PP_5028 0.46 +0.3 5,729,894 + PP_5028 0.46 +0.3 5,729,927 + PP_5028 0.49 +0.3 5,730,064 + PP_5028 0.62 +0.3 5,730,064 + PP_5028 0.62 +0.3 5,730,185 + PP_5028 0.73 +0.3 5,730,203 + PP_5028 0.75 +0.3 5,730,203 + PP_5028 0.75 -0.5 5,730,293 + PP_5028 0.83 +0.3 5,730,293 + PP_5028 0.83 +0.3 5,730,294 - PP_5028 0.83 +0.3 5,730,294 - PP_5028 0.83 +0.3 5,730,387 + +2.6 5,730,387 + +0.3 5,730,387 + +2.6
Or see this region's nucleotide sequence