Experiment: pH 4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PP_4737 and PP_4738 are separated by 319 nucleotides PP_4738 and PP_4739 are separated by 857 nucleotides
PP_4737: PP_4737 - D-lactate dehydrogenase, at 5,386,491 to 5,389,301
_4737
PP_4738: PP_4738 - conserved exported protein of unknown function, at 5,389,621 to 5,389,911
_4738
PP_4739: PP_4739 - conserved protein of unknown function, at 5,390,769 to 5,391,011
_4739
Position (kb)
5389
5390 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1
2
3 at 5388.642 kb on + strand, within PP_4737 at 5388.642 kb on + strand, within PP_4737 at 5388.642 kb on + strand, within PP_4737 at 5388.852 kb on + strand, within PP_4737 at 5388.853 kb on - strand, within PP_4737 at 5388.919 kb on - strand, within PP_4737 at 5388.919 kb on - strand, within PP_4737 at 5389.088 kb on + strand at 5389.088 kb on + strand at 5389.089 kb on - strand at 5389.124 kb on + strand at 5389.124 kb on + strand at 5389.125 kb on - strand at 5389.180 kb on - strand at 5389.194 kb on - strand at 5389.248 kb on + strand at 5389.249 kb on - strand at 5389.249 kb on - strand at 5389.263 kb on + strand at 5389.263 kb on + strand at 5389.264 kb on - strand at 5389.310 kb on + strand at 5389.311 kb on - strand at 5389.311 kb on - strand at 5389.311 kb on - strand at 5389.312 kb on + strand at 5389.312 kb on + strand at 5389.313 kb on - strand at 5389.313 kb on - strand at 5389.313 kb on - strand at 5389.313 kb on - strand at 5389.330 kb on + strand at 5389.331 kb on - strand at 5389.342 kb on + strand at 5389.416 kb on - strand at 5389.462 kb on + strand at 5389.462 kb on + strand at 5389.462 kb on + strand at 5389.463 kb on - strand at 5389.485 kb on + strand at 5389.521 kb on + strand at 5389.521 kb on + strand at 5389.521 kb on + strand at 5389.522 kb on - strand at 5389.583 kb on + strand at 5389.583 kb on + strand at 5389.584 kb on - strand at 5389.584 kb on - strand at 5389.842 kb on + strand, within PP_4738 at 5389.842 kb on + strand, within PP_4738 at 5389.843 kb on - strand, within PP_4738 at 5389.843 kb on - strand, within PP_4738 at 5389.843 kb on - strand, within PP_4738 at 5389.963 kb on + strand at 5389.965 kb on + strand at 5389.984 kb on + strand at 5390.501 kb on + strand at 5390.519 kb on + strand at 5390.519 kb on + strand at 5390.520 kb on - strand at 5390.520 kb on - strand at 5390.520 kb on - strand at 5390.520 kb on - strand at 5390.520 kb on - strand at 5390.565 kb on - strand at 5390.565 kb on - strand at 5390.617 kb on + strand at 5390.617 kb on + strand at 5390.618 kb on - strand at 5390.618 kb on - strand at 5390.631 kb on - strand at 5390.631 kb on - strand at 5390.765 kb on + strand at 5390.765 kb on + strand at 5390.773 kb on + strand at 5390.773 kb on + strand at 5390.878 kb on + strand, within PP_4739 at 5390.878 kb on + strand, within PP_4739
Per-strain Table
Position Strand Gene LocusTag Fraction pH 4 remove 5,388,642 + PP_4737 0.77 +0.2 5,388,642 + PP_4737 0.77 -0.1 5,388,642 + PP_4737 0.77 -0.1 5,388,852 + PP_4737 0.84 -0.8 5,388,853 - PP_4737 0.84 -1.7 5,388,919 - PP_4737 0.86 -0.5 5,388,919 - PP_4737 0.86 -1.6 5,389,088 + -0.0 5,389,088 + +1.0 5,389,089 - +0.3 5,389,124 + -0.7 5,389,124 + -1.4 5,389,125 - -3.0 5,389,180 - +0.2 5,389,194 - +0.3 5,389,248 + -1.2 5,389,249 - -1.8 5,389,249 - -0.9 5,389,263 + +0.0 5,389,263 + -0.3 5,389,264 - -3.8 5,389,310 + -0.4 5,389,311 - +0.3 5,389,311 - -1.9 5,389,311 - -0.7 5,389,312 + -0.7 5,389,312 + -1.2 5,389,313 - +0.3 5,389,313 - +1.0 5,389,313 - +2.6 5,389,313 - -2.1 5,389,330 + -2.2 5,389,331 - -0.6 5,389,342 + +1.8 5,389,416 - -3.4 5,389,462 + -1.3 5,389,462 + +1.8 5,389,462 + +1.1 5,389,463 - -0.7 5,389,485 + -1.9 5,389,521 + +0.1 5,389,521 + +0.8 5,389,521 + +0.1 5,389,522 - +0.3 5,389,583 + +0.2 5,389,583 + +0.6 5,389,584 - +0.3 5,389,584 - -2.5 5,389,842 + PP_4738 0.76 +0.3 5,389,842 + PP_4738 0.76 -4.4 5,389,843 - PP_4738 0.76 +1.3 5,389,843 - PP_4738 0.76 -0.7 5,389,843 - PP_4738 0.76 -1.1 5,389,963 + +0.3 5,389,965 + +0.3 5,389,984 + +0.3 5,390,501 + +1.1 5,390,519 + +0.9 5,390,519 + +0.4 5,390,520 - -2.6 5,390,520 - +0.5 5,390,520 - -3.3 5,390,520 - +1.5 5,390,520 - +0.3 5,390,565 - -0.1 5,390,565 - +0.2 5,390,617 + -0.2 5,390,617 + +0.1 5,390,618 - +3.2 5,390,618 - -0.7 5,390,631 - -1.7 5,390,631 - -0.4 5,390,765 + +0.2 5,390,765 + +0.8 5,390,773 + +0.4 5,390,773 + -0.3 5,390,878 + PP_4739 0.45 -1.3 5,390,878 + PP_4739 0.45 +2.5
Or see this region's nucleotide sequence