Strain Fitness in Pseudomonas putida KT2440 around PP_2388

Experiment: pH 4

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	pH 4
2,726,140	-		PP_2387	0.52	+1.5
2,726,163	-		PP_2387	0.54	+0.2
2,726,163	-		PP_2387	0.54	+1.2
2,726,565	+				-0.6
2,726,567	+				+1.0
2,726,567	+				+1.0
2,726,606	+				+1.3
2,726,606	+				+1.3
2,726,721	-				-0.6
2,726,822	+		PP_2388	0.20	-4.6
2,726,822	+		PP_2388	0.20	-5.5
2,726,822	+		PP_2388	0.20	-3.6
2,726,823	-		PP_2388	0.20	-2.6
2,726,823	-		PP_2388	0.20	-3.5
2,727,069	-		PP_2388	0.60	-3.9
2,727,277	+				-1.8
2,727,277	+				-5.1
2,727,278	-				-3.9
2,727,297	-				-4.0
2,727,297	-				-4.4
2,727,316	-				-3.7
2,727,337	+				-5.4
2,727,339	+				-3.5
2,727,340	-				+1.1
2,727,436	+		PP_2389	0.14	+1.2
2,727,437	-				+1.8
2,727,490	+		PP_2389	0.21	+0.2
2,727,759	+		PP_2389	0.55	-5.1
2,727,760	-		PP_2389	0.55	+3.9
2,727,760	-		PP_2389	0.55	+0.4
2,727,877	+		PP_2389	0.70	-5.3
2,727,877	+		PP_2389	0.70	-5.2
2,727,877	+		PP_2389	0.70	-1.2
2,727,877	+		PP_2389	0.70	-3.6
2,727,878	-		PP_2389	0.70	-0.2
2,727,878	-		PP_2389	0.70	+1.2
2,727,878	-		PP_2389	0.70	+0.7
2,727,878	-		PP_2389	0.70	+0.7
2,727,878	-		PP_2389	0.70	+0.5
2,727,878	-		PP_2389	0.70	+2.2
2,727,954	+		PP_2389	0.80	-3.0
2,728,001	+		PP_2389	0.86	-4.7
2,728,018	-		PP_2389	0.88	+0.2
2,728,232	+				-5.9
2,728,240	-				+1.2
2,728,246	-				+1.7