Strain Fitness in Pseudomonas putida KT2440 around PP_2001

Experiment: pH 4

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	pH 4
2,268,364	-		PP_2000	0.46	+0.2
2,269,170	+				-3.0
2,269,333	+		PP_2001	0.11	+0.2
2,269,333	+		PP_2001	0.11	-2.8
2,269,334	-		PP_2001	0.11	-0.8
2,269,406	-		PP_2001	0.17	+0.2
2,269,477	-		PP_2001	0.23	-3.3
2,269,477	-		PP_2001	0.23	-2.6
2,269,591	+		PP_2001	0.32	-4.5
2,269,591	+		PP_2001	0.32	-5.0
2,269,591	+		PP_2001	0.32	-4.3
2,269,592	-		PP_2001	0.33	-3.3
2,269,592	-		PP_2001	0.33	-4.3
2,269,592	-		PP_2001	0.33	-5.8
2,269,592	-		PP_2001	0.33	-3.6
2,269,610	+		PP_2001	0.34	-4.6
2,269,611	-		PP_2001	0.34	-4.3
2,269,611	-		PP_2001	0.34	-2.8
2,269,621	+		PP_2001	0.35	-3.9
2,269,725	+		PP_2001	0.43	-5.3
2,269,726	-		PP_2001	0.44	-3.3
2,269,903	-		PP_2001	0.58	-2.8
2,270,010	+		PP_2001	0.67	-3.5
2,270,011	-		PP_2001	0.67	-4.3
2,270,011	-		PP_2001	0.67	-3.4
2,270,086	+		PP_2001	0.73	+0.2
2,270,087	-		PP_2001	0.73	-3.8
2,270,319	+				-3.1
2,270,805	+		PP_2002	0.52	-2.5
2,270,806	-		PP_2002	0.52	+1.8
2,270,847	-		PP_2002	0.57	+1.2
2,270,884	-		PP_2002	0.62	-0.8
2,270,884	-		PP_2002	0.62	-0.7
2,271,171	+				-2.4
2,271,171	+				+0.0
2,271,171	+				-2.0
2,271,171	+				-0.6
2,271,171	+				+2.5
2,271,171	+				+1.8
2,271,171	+				-0.2
2,271,171	+				+4.0
2,271,172	-				-1.4
2,271,172	-				-1.8
2,271,172	-				-3.9
2,271,172	-				-3.0
2,271,172	-				+0.5
2,271,172	-				-0.5
2,271,172	-				+1.4
2,271,172	-				+2.8
2,271,173	+				-3.4
2,271,173	+				+3.2
2,271,174	-				+0.7
2,271,227	+				-1.6
2,271,228	-				+0.0
2,271,236	+				-0.9
2,271,249	+				+4.0
2,271,249	+				+1.1
2,271,250	-				-2.8