Strain Fitness in Pseudomonas putida KT2440 around PP_1231

Experiment: pH 4

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	pH 4
1,408,377	+		PP_1230	0.55	+1.7
1,408,377	+		PP_1230	0.55	+0.9
1,408,378	-		PP_1230	0.55	-0.1
1,408,378	-		PP_1230	0.55	-1.7
1,408,395	-		PP_1230	0.56	+1.9
1,408,431	+		PP_1230	0.59	-1.2
1,408,956	-				-1.0
1,408,979	+				-1.0
1,409,099	+				+0.5
1,409,099	+				+1.2
1,409,100	-				+0.5
1,409,117	+				-0.8
1,409,156	+				-0.6
1,409,170	+				+0.5
1,409,170	+				-1.2
1,409,171	-				-0.7
1,409,171	-				-0.3
1,409,171	-				-2.5
1,409,171	-				-1.4
1,409,171	-				-1.2
1,409,192	-				-0.8
1,409,211	+				-0.3
1,409,212	-				-0.3
1,409,212	-				-1.1
1,409,263	-				-3.3
1,409,263	-				-1.4
1,409,288	-				-2.0
1,409,288	-				+0.2
1,409,476	-		PP_1231	0.14	-3.7
1,409,476	-		PP_1231	0.14	-3.8
1,409,478	+		PP_1231	0.14	+0.3
1,409,478	+		PP_1231	0.14	-5.0
1,409,479	-		PP_1231	0.14	+0.3
1,409,479	-		PP_1231	0.14	-4.1
1,409,647	+		PP_1231	0.30	-2.3
1,409,648	-		PP_1231	0.30	-2.0
1,409,749	-		PP_1231	0.39	+0.3
1,409,883	+		PP_1231	0.52	-2.0
1,409,883	+		PP_1231	0.52	+0.3
1,409,883	+		PP_1231	0.52	-3.1
1,409,884	-		PP_1231	0.52	-5.4
1,410,405	+				+0.1
1,410,406	-				+0.8
1,410,434	+				+2.0
1,410,437	-				-1.0
1,410,437	-				+1.3
1,410,437	-				-0.9
1,410,437	-				+0.3
1,410,437	-				-0.5
1,410,448	+				-1.4
1,410,607	+				-2.0
1,410,607	+				-2.7
1,410,643	-		PP_1232	0.10	+3.5
1,410,656	-		PP_1232	0.11	-2.6
1,410,656	-		PP_1232	0.11	-0.0
1,410,656	-		PP_1232	0.11	-0.1
1,410,687	-		PP_1232	0.13	-2.8
1,410,687	-		PP_1232	0.13	+0.1
1,410,687	-		PP_1232	0.13	+0.9
1,410,932	-		PP_1232	0.30	-0.1
1,411,027	+		PP_1232	0.37	-1.0
1,411,028	-		PP_1232	0.37	+0.3
1,411,105	+		PP_1232	0.42	+0.3
1,411,105	+		PP_1232	0.42	+0.6
1,411,106	-		PP_1232	0.42	-0.0
1,411,106	-		PP_1232	0.42	+1.3
1,411,139	-		PP_1232	0.45	-0.0
1,411,187	+		PP_1232	0.48	-1.8
1,411,202	+		PP_1232	0.49	+2.6
1,411,202	+		PP_1232	0.49	-3.0