Experiment: pH 4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PP_0432 and PP_0433 are separated by 99 nucleotides PP_0433 and PP_0434 are separated by 59 nucleotides PP_0434 and PP_0435 are separated by 3 nucleotides
PP_0432: PP_0432 - N-acetyl-gamma-glutamyl-phosphate reductase 1, at 518,612 to 519,646
_0432
PP_0433: PP_0433 - Iron-sulfur cluster insertion protein ErpA, at 519,746 to 520,144
_0433
PP_0434: PP_0434 - Anhydro-N-acetylmuramic acid kinase, at 520,204 to 521,295
_0434
PP_0435: PP_0435 - Peptidase, M23/M37 family, at 521,299 to 522,726
_0435
Position (kb) 520
521
522 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1
2 at 519.367 kb on + strand, within PP_0432 at 519.764 kb on + strand at 520.142 kb on + strand at 520.143 kb on - strand at 520.155 kb on + strand at 520.155 kb on + strand at 520.205 kb on + strand at 520.337 kb on - strand, within PP_0434 at 520.343 kb on + strand, within PP_0434 at 520.375 kb on + strand, within PP_0434 at 520.375 kb on + strand, within PP_0434 at 520.376 kb on - strand, within PP_0434 at 520.692 kb on - strand, within PP_0434 at 520.692 kb on - strand, within PP_0434 at 520.692 kb on - strand, within PP_0434 at 520.807 kb on + strand, within PP_0434 at 520.807 kb on + strand, within PP_0434 at 520.808 kb on - strand, within PP_0434 at 520.813 kb on - strand, within PP_0434 at 520.978 kb on - strand, within PP_0434 at 521.076 kb on + strand, within PP_0434 at 521.077 kb on - strand, within PP_0434 at 521.195 kb on + strand at 521.196 kb on - strand at 521.285 kb on + strand at 521.285 kb on + strand at 521.285 kb on + strand at 521.286 kb on - strand at 521.301 kb on - strand at 521.466 kb on - strand, within PP_0435 at 521.507 kb on + strand, within PP_0435 at 521.507 kb on + strand, within PP_0435 at 521.508 kb on - strand, within PP_0435 at 521.580 kb on - strand, within PP_0435 at 521.591 kb on + strand, within PP_0435 at 521.592 kb on - strand, within PP_0435 at 521.837 kb on + strand, within PP_0435 at 521.837 kb on + strand, within PP_0435 at 521.837 kb on + strand, within PP_0435 at 521.838 kb on - strand, within PP_0435 at 521.838 kb on - strand, within PP_0435 at 521.840 kb on + strand, within PP_0435 at 521.840 kb on + strand, within PP_0435 at 521.840 kb on + strand, within PP_0435 at 521.840 kb on + strand, within PP_0435 at 521.840 kb on + strand, within PP_0435 at 521.841 kb on - strand, within PP_0435 at 521.841 kb on - strand, within PP_0435 at 521.841 kb on - strand at 521.841 kb on - strand, within PP_0435 at 521.841 kb on - strand, within PP_0435 at 521.841 kb on - strand, within PP_0435 at 521.841 kb on - strand at 521.844 kb on + strand, within PP_0435 at 521.844 kb on + strand, within PP_0435 at 521.844 kb on + strand, within PP_0435 at 521.844 kb on + strand, within PP_0435 at 521.844 kb on + strand, within PP_0435 at 521.844 kb on + strand, within PP_0435 at 521.845 kb on - strand, within PP_0435 at 521.845 kb on - strand, within PP_0435 at 521.845 kb on - strand, within PP_0435 at 521.845 kb on - strand, within PP_0435 at 521.845 kb on - strand, within PP_0435 at 521.882 kb on + strand, within PP_0435 at 521.883 kb on - strand, within PP_0435 at 521.883 kb on - strand, within PP_0435 at 521.963 kb on + strand, within PP_0435 at 521.964 kb on - strand, within PP_0435 at 522.017 kb on + strand, within PP_0435 at 522.113 kb on + strand, within PP_0435 at 522.113 kb on + strand, within PP_0435 at 522.125 kb on - strand, within PP_0435 at 522.159 kb on - strand, within PP_0435
Per-strain Table
Position Strand Gene LocusTag Fraction pH 4 remove 519,367 + PP_0432 0.73 -1.9 519,764 + -0.6 520,142 + -2.0 520,143 - -2.3 520,155 + +0.6 520,155 + +2.3 520,205 + -1.6 520,337 - PP_0434 0.12 -2.6 520,343 + PP_0434 0.13 -4.2 520,375 + PP_0434 0.16 -1.7 520,375 + PP_0434 0.16 -2.1 520,376 - PP_0434 0.16 -0.6 520,692 - PP_0434 0.45 -1.8 520,692 - PP_0434 0.45 -2.4 520,692 - PP_0434 0.45 -5.5 520,807 + PP_0434 0.55 -1.4 520,807 + PP_0434 0.55 -1.2 520,808 - PP_0434 0.55 -2.0 520,813 - PP_0434 0.56 -1.7 520,978 - PP_0434 0.71 -0.7 521,076 + PP_0434 0.80 -2.1 521,077 - PP_0434 0.80 -3.6 521,195 + -4.7 521,196 - -2.4 521,285 + -1.7 521,285 + -3.2 521,285 + -0.9 521,286 - -2.4 521,301 - -0.8 521,466 - PP_0435 0.12 -2.1 521,507 + PP_0435 0.15 -2.6 521,507 + PP_0435 0.15 -3.5 521,508 - PP_0435 0.15 +0.4 521,580 - PP_0435 0.20 -1.8 521,591 + PP_0435 0.20 -3.0 521,592 - PP_0435 0.21 -1.9 521,837 + PP_0435 0.38 -2.2 521,837 + PP_0435 0.38 -4.5 521,837 + PP_0435 0.38 -1.8 521,838 - PP_0435 0.38 -1.8 521,838 - PP_0435 0.38 -1.9 521,840 + PP_0435 0.38 -1.9 521,840 + PP_0435 0.38 -0.4 521,840 + PP_0435 0.38 -4.2 521,840 + PP_0435 0.38 -2.7 521,840 + PP_0435 0.38 -2.3 521,841 - PP_0435 0.38 -1.5 521,841 - PP_0435 0.38 -1.6 521,841 - -1.8 521,841 - PP_0435 0.38 -2.5 521,841 - PP_0435 0.38 -2.1 521,841 - PP_0435 0.38 -1.8 521,841 - -1.9 521,844 + PP_0435 0.38 -2.4 521,844 + PP_0435 0.38 -2.5 521,844 + PP_0435 0.38 -2.8 521,844 + PP_0435 0.38 -3.2 521,844 + PP_0435 0.38 -2.6 521,844 + PP_0435 0.38 -1.6 521,845 - PP_0435 0.38 -2.9 521,845 - PP_0435 0.38 +2.0 521,845 - PP_0435 0.38 -2.0 521,845 - PP_0435 0.38 -2.7 521,845 - PP_0435 0.38 -3.1 521,882 + PP_0435 0.41 -1.0 521,883 - PP_0435 0.41 -4.1 521,883 - PP_0435 0.41 -1.9 521,963 + PP_0435 0.46 -2.0 521,964 - PP_0435 0.47 -1.2 522,017 + PP_0435 0.50 -3.7 522,113 + PP_0435 0.57 -3.0 522,113 + PP_0435 0.57 -3.7 522,125 - PP_0435 0.58 -1.2 522,159 - PP_0435 0.60 -1.8
Or see this region's nucleotide sequence