Strain Fitness in Pseudomonas putida KT2440 around PP_0184

Experiment: pH 4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPP_0182 and PP_0183 are separated by 148 nucleotidesPP_0183 and PP_0184 are separated by 124 nucleotidesPP_0184 and PP_0185 are separated by 285 nucleotides PP_0182: PP_0182 - conserved protein of unknown function, at 234,190 to 234,492 _0182 PP_0183: PP_0183 - glutathione S-transferase, at 234,641 to 235,303 _0183 PP_0184: PP_0184 - Argininosuccinate lyase, at 235,428 to 236,834 _0184 PP_0185: PP_0185 - Positive alginate biosynthesis regulatory protein, at 237,120 to 237,863 _0185 Position (kb) 235 236 237Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 234.505 kb on - strandat 234.505 kb on - strandat 234.505 kb on - strandat 234.505 kb on - strandat 234.533 kb on + strandat 234.533 kb on + strandat 234.596 kb on + strandat 234.596 kb on + strandat 234.597 kb on - strandat 234.597 kb on - strandat 234.598 kb on + strandat 234.599 kb on - strandat 234.599 kb on - strandat 234.599 kb on - strandat 234.599 kb on - strandat 234.674 kb on + strandat 234.675 kb on - strandat 234.677 kb on + strandat 234.677 kb on + strandat 234.677 kb on + strandat 234.677 kb on + strandat 234.677 kb on + strandat 234.678 kb on - strandat 234.678 kb on - strandat 234.678 kb on - strandat 234.737 kb on + strand, within PP_0183at 234.738 kb on - strand, within PP_0183at 234.842 kb on + strand, within PP_0183at 234.842 kb on + strand, within PP_0183at 234.843 kb on - strand, within PP_0183at 234.843 kb on - strand, within PP_0183at 234.845 kb on - strand, within PP_0183at 234.935 kb on + strand, within PP_0183at 234.935 kb on + strand, within PP_0183at 234.936 kb on - strand, within PP_0183at 234.936 kb on - strand, within PP_0183at 234.955 kb on + strand, within PP_0183at 234.955 kb on + strand, within PP_0183at 234.962 kb on + strand, within PP_0183at 235.073 kb on + strand, within PP_0183at 235.073 kb on + strand, within PP_0183at 235.073 kb on + strand, within PP_0183at 235.074 kb on - strand, within PP_0183at 235.074 kb on - strand, within PP_0183at 235.074 kb on - strand, within PP_0183at 235.074 kb on - strand, within PP_0183at 235.074 kb on - strand, within PP_0183at 235.074 kb on - strand, within PP_0183at 235.074 kb on - strand, within PP_0183at 235.074 kb on - strand, within PP_0183at 235.373 kb on + strandat 235.373 kb on + strandat 235.627 kb on + strand, within PP_0184at 235.627 kb on + strand, within PP_0184at 235.628 kb on - strand, within PP_0184at 235.628 kb on - strand, within PP_0184at 235.628 kb on - strand, within PP_0184at 235.690 kb on + strand, within PP_0184at 235.690 kb on + strand, within PP_0184at 235.690 kb on - strand, within PP_0184at 235.691 kb on - strand, within PP_0184at 235.858 kb on + strand, within PP_0184at 235.858 kb on + strand, within PP_0184at 235.932 kb on + strand, within PP_0184at 235.933 kb on - strand, within PP_0184at 236.269 kb on + strand, within PP_0184at 236.269 kb on + strand, within PP_0184at 236.269 kb on + strand, within PP_0184at 236.270 kb on - strand, within PP_0184at 236.270 kb on - strand, within PP_0184at 236.270 kb on - strand, within PP_0184at 236.495 kb on + strand, within PP_0184at 236.496 kb on - strand, within PP_0184at 236.496 kb on - strand, within PP_0184at 236.717 kb on - strandat 236.867 kb on + strandat 236.867 kb on + strandat 236.868 kb on - strandat 236.868 kb on - strandat 236.868 kb on - strandat 236.868 kb on - strandat 236.868 kb on - strandat 236.971 kb on + strandat 237.076 kb on + strandat 237.076 kb on + strandat 237.076 kb on + strandat 237.077 kb on - strandat 237.081 kb on + strandat 237.081 kb on + strandat 237.081 kb on + strandat 237.082 kb on - strandat 237.082 kb on - strandat 237.082 kb on - strandat 237.083 kb on + strandat 237.083 kb on + strandat 237.083 kb on + strandat 237.083 kb on + strandat 237.084 kb on - strandat 237.084 kb on - strandat 237.084 kb on - strandat 237.084 kb on - strandat 237.084 kb on - strandat 237.119 kb on + strandat 237.119 kb on + strandat 237.120 kb on - strandat 237.195 kb on + strand, within PP_0185at 237.195 kb on + strand, within PP_0185at 237.195 kb on + strand, within PP_0185at 237.196 kb on - strand, within PP_0185at 237.379 kb on - strand, within PP_0185at 237.379 kb on - strand, within PP_0185at 237.379 kb on - strand, within PP_0185at 237.540 kb on - strand, within PP_0185at 237.594 kb on + strand, within PP_0185at 237.615 kb on + strand, within PP_0185at 237.615 kb on + strand, within PP_0185at 237.615 kb on + strand, within PP_0185at 237.615 kb on + strand, within PP_0185at 237.615 kb on + strand, within PP_0185at 237.615 kb on + strandat 237.615 kb on + strand, within PP_0185at 237.615 kb on + strand, within PP_0185at 237.615 kb on + strand, within PP_0185at 237.616 kb on - strand, within PP_0185at 237.616 kb on - strand, within PP_0185at 237.616 kb on - strand, within PP_0185at 237.616 kb on - strand, within PP_0185at 237.616 kb on - strand, within PP_0185at 237.781 kb on - strand, within PP_0185

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Per-strain Table

Position Strand Gene LocusTag Fraction pH 4
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234,505 - +0.1
234,505 - +1.7
234,505 - -0.6
234,505 - -1.9
234,533 + +1.0
234,533 + +2.7
234,596 + -0.7
234,596 + -2.8
234,597 - +2.4
234,597 - +0.6
234,598 + -0.7
234,599 - -1.7
234,599 - -1.9
234,599 - -0.6
234,599 - +0.2
234,674 + +0.3
234,675 - +1.3
234,677 + +0.4
234,677 + -0.7
234,677 + +0.5
234,677 + -1.8
234,677 + -0.4
234,678 - +1.1
234,678 - -1.2
234,678 - +1.2
234,737 + PP_0183 0.14 -1.1
234,738 - PP_0183 0.15 -1.0
234,842 + PP_0183 0.30 -2.6
234,842 + PP_0183 0.30 +0.4
234,843 - PP_0183 0.30 -0.4
234,843 - PP_0183 0.30 +1.2
234,845 - PP_0183 0.31 -0.8
234,935 + PP_0183 0.44 +2.7
234,935 + PP_0183 0.44 -0.3
234,936 - PP_0183 0.44 -0.2
234,936 - PP_0183 0.44 +0.4
234,955 + PP_0183 0.47 +1.7
234,955 + PP_0183 0.47 +1.4
234,962 + PP_0183 0.48 +0.2
235,073 + PP_0183 0.65 +0.7
235,073 + PP_0183 0.65 +2.1
235,073 + PP_0183 0.65 -0.7
235,074 - PP_0183 0.65 +0.4
235,074 - PP_0183 0.65 -0.3
235,074 - PP_0183 0.65 +1.7
235,074 - PP_0183 0.65 -1.2
235,074 - PP_0183 0.65 +0.6
235,074 - PP_0183 0.65 -2.2
235,074 - PP_0183 0.65 -0.6
235,074 - PP_0183 0.65 +1.2
235,373 + -1.4
235,373 + +2.3
235,627 + PP_0184 0.14 -1.6
235,627 + PP_0184 0.14 +0.4
235,628 - PP_0184 0.14 +0.4
235,628 - PP_0184 0.14 -3.2
235,628 - PP_0184 0.14 +0.4
235,690 + PP_0184 0.19 -3.4
235,690 + PP_0184 0.19 -1.2
235,690 - PP_0184 0.19 +0.4
235,691 - PP_0184 0.19 -0.6
235,858 + PP_0184 0.31 -1.9
235,858 + PP_0184 0.31 -1.6
235,932 + PP_0184 0.36 +0.4
235,933 - PP_0184 0.36 -2.9
236,269 + PP_0184 0.60 +0.4
236,269 + PP_0184 0.60 -2.2
236,269 + PP_0184 0.60 -2.2
236,270 - PP_0184 0.60 -3.4
236,270 - PP_0184 0.60 +0.4
236,270 - PP_0184 0.60 +0.4
236,495 + PP_0184 0.76 +0.4
236,496 - PP_0184 0.76 +0.4
236,496 - PP_0184 0.76 -1.6
236,717 - +0.4
236,867 + -1.2
236,867 + +0.4
236,868 - +2.0
236,868 - -1.0
236,868 - +1.4
236,868 - -0.6
236,868 - +1.1
236,971 + +1.1
237,076 + +0.4
237,076 + +2.4
237,076 + -1.6
237,077 - -2.2
237,081 + +1.3
237,081 + -0.9
237,081 + +0.4
237,082 - -0.8
237,082 - -1.1
237,082 - +0.4
237,083 + -2.4
237,083 + -2.6
237,083 + +0.7
237,083 + -1.1
237,084 - -0.5
237,084 - -0.6
237,084 - -2.4
237,084 - +0.3
237,084 - -1.5
237,119 + -1.3
237,119 + +0.5
237,120 - -1.0
237,195 + PP_0185 0.10 +3.2
237,195 + PP_0185 0.10 -1.2
237,195 + PP_0185 0.10 -0.4
237,196 - PP_0185 0.10 -0.4
237,379 - PP_0185 0.35 -1.1
237,379 - PP_0185 0.35 -0.6
237,379 - PP_0185 0.35 -0.5
237,540 - PP_0185 0.56 -0.2
237,594 + PP_0185 0.64 -0.9
237,615 + PP_0185 0.67 -0.0
237,615 + PP_0185 0.67 +0.8
237,615 + PP_0185 0.67 -1.1
237,615 + PP_0185 0.67 -0.2
237,615 + PP_0185 0.67 -3.5
237,615 + +3.4
237,615 + PP_0185 0.67 +0.2
237,615 + PP_0185 0.67 +3.6
237,615 + PP_0185 0.67 +1.2
237,616 - PP_0185 0.67 +3.4
237,616 - PP_0185 0.67 -0.1
237,616 - PP_0185 0.67 -1.1
237,616 - PP_0185 0.67 -1.8
237,616 - PP_0185 0.67 +0.2
237,781 - PP_0185 0.89 -1.4

Or see this region's nucleotide sequence