Strain Fitness in Pseudomonas fluorescens SBW25-INTG around PFLU_RS25570

Experiment: Sucrose (C) and Glycine betaine (N); with MOPS

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPFLU_RS25565 and PFLU_RS25570 are separated by 333 nucleotidesPFLU_RS25570 and PFLU_RS25575 are separated by 25 nucleotides PFLU_RS25565: PFLU_RS25565 - hypothetical protein, at 5,704,057 to 5,705,004 _RS25565 PFLU_RS25570: PFLU_RS25570 - OmpA family protein, at 5,705,338 to 5,705,808 _RS25570 PFLU_RS25575: PFLU_RS25575 - diguanylate cyclase, at 5,705,834 to 5,707,096 _RS25575 Position (kb) 5705 5706Strain fitness (log2 ratio) -2 -1 0 1 2at 5704.341 kb on - strand, within PFLU_RS25565at 5704.374 kb on + strand, within PFLU_RS25565at 5704.374 kb on + strand, within PFLU_RS25565at 5704.374 kb on + strand, within PFLU_RS25565at 5704.375 kb on - strand, within PFLU_RS25565at 5704.443 kb on + strand, within PFLU_RS25565at 5704.443 kb on + strand, within PFLU_RS25565at 5704.443 kb on + strand, within PFLU_RS25565at 5704.444 kb on - strand, within PFLU_RS25565at 5704.486 kb on + strand, within PFLU_RS25565at 5704.487 kb on - strand, within PFLU_RS25565at 5704.556 kb on + strand, within PFLU_RS25565at 5704.557 kb on - strand, within PFLU_RS25565at 5704.557 kb on - strand, within PFLU_RS25565at 5704.563 kb on + strand, within PFLU_RS25565at 5704.564 kb on - strand, within PFLU_RS25565at 5704.564 kb on - strand, within PFLU_RS25565at 5704.567 kb on + strand, within PFLU_RS25565at 5704.567 kb on + strand, within PFLU_RS25565at 5704.567 kb on + strand, within PFLU_RS25565at 5704.567 kb on + strand, within PFLU_RS25565at 5704.567 kb on + strand, within PFLU_RS25565at 5704.568 kb on - strand, within PFLU_RS25565at 5704.568 kb on - strand, within PFLU_RS25565at 5704.568 kb on - strand, within PFLU_RS25565at 5704.568 kb on - strand, within PFLU_RS25565at 5704.568 kb on - strand, within PFLU_RS25565at 5704.590 kb on + strand, within PFLU_RS25565at 5704.590 kb on + strand, within PFLU_RS25565at 5704.590 kb on + strand, within PFLU_RS25565at 5704.590 kb on + strand, within PFLU_RS25565at 5704.590 kb on + strand, within PFLU_RS25565at 5704.590 kb on + strand, within PFLU_RS25565at 5704.590 kb on + strand, within PFLU_RS25565at 5704.590 kb on + strand, within PFLU_RS25565at 5704.590 kb on + strand, within PFLU_RS25565at 5704.591 kb on - strand, within PFLU_RS25565at 5704.591 kb on - strand, within PFLU_RS25565at 5704.591 kb on - strand, within PFLU_RS25565at 5704.591 kb on - strand, within PFLU_RS25565at 5704.591 kb on - strand, within PFLU_RS25565at 5704.591 kb on - strand, within PFLU_RS25565at 5704.591 kb on - strand, within PFLU_RS25565at 5704.591 kb on - strand, within PFLU_RS25565at 5704.591 kb on - strand, within PFLU_RS25565at 5704.591 kb on - strand, within PFLU_RS25565at 5704.594 kb on + strand, within PFLU_RS25565at 5704.594 kb on + strand, within PFLU_RS25565at 5704.594 kb on + strand, within PFLU_RS25565at 5704.594 kb on + strand, within PFLU_RS25565at 5704.594 kb on + strand, within PFLU_RS25565at 5704.594 kb on + strand, within PFLU_RS25565at 5704.594 kb on + strand, within PFLU_RS25565at 5704.594 kb on + strand, within PFLU_RS25565at 5704.594 kb on + strand, within PFLU_RS25565at 5704.595 kb on - strand, within PFLU_RS25565at 5704.595 kb on - strand, within PFLU_RS25565at 5704.595 kb on - strand, within PFLU_RS25565at 5704.595 kb on - strand, within PFLU_RS25565at 5704.595 kb on - strand, within PFLU_RS25565at 5704.595 kb on - strand, within PFLU_RS25565at 5704.595 kb on - strand, within PFLU_RS25565at 5704.595 kb on - strand, within PFLU_RS25565at 5704.595 kb on - strand, within PFLU_RS25565at 5704.595 kb on - strand, within PFLU_RS25565at 5704.595 kb on - strand, within PFLU_RS25565at 5704.595 kb on - strand, within PFLU_RS25565at 5704.595 kb on - strand, within PFLU_RS25565at 5704.595 kb on - strand, within PFLU_RS25565at 5704.595 kb on - strand, within PFLU_RS25565at 5704.598 kb on + strand, within PFLU_RS25565at 5704.599 kb on - strand, within PFLU_RS25565at 5704.599 kb on - strand, within PFLU_RS25565at 5704.622 kb on + strand, within PFLU_RS25565at 5704.622 kb on + strand, within PFLU_RS25565at 5704.622 kb on + strand, within PFLU_RS25565at 5704.622 kb on + strand, within PFLU_RS25565at 5704.623 kb on - strand, within PFLU_RS25565at 5704.623 kb on - strand, within PFLU_RS25565at 5704.623 kb on - strand, within PFLU_RS25565at 5704.623 kb on - strand, within PFLU_RS25565at 5704.648 kb on - strand, within PFLU_RS25565at 5704.677 kb on + strand, within PFLU_RS25565at 5704.677 kb on + strand, within PFLU_RS25565at 5704.821 kb on + strand, within PFLU_RS25565at 5704.821 kb on + strand, within PFLU_RS25565at 5704.825 kb on + strand, within PFLU_RS25565at 5704.826 kb on - strand, within PFLU_RS25565at 5704.826 kb on - strand, within PFLU_RS25565at 5704.837 kb on + strand, within PFLU_RS25565at 5704.838 kb on - strand, within PFLU_RS25565at 5704.838 kb on - strand, within PFLU_RS25565at 5704.838 kb on - strand, within PFLU_RS25565at 5704.996 kb on + strandat 5705.015 kb on + strandat 5705.085 kb on - strandat 5705.118 kb on - strandat 5705.118 kb on - strandat 5705.255 kb on + strandat 5705.255 kb on + strandat 5705.310 kb on + strandat 5705.310 kb on + strandat 5705.310 kb on + strandat 5705.310 kb on + strandat 5705.357 kb on - strandat 5705.490 kb on + strand, within PFLU_RS25570at 5705.519 kb on + strand, within PFLU_RS25570at 5705.519 kb on + strand, within PFLU_RS25570at 5705.519 kb on + strand, within PFLU_RS25570at 5705.519 kb on + strand, within PFLU_RS25570at 5705.520 kb on - strand, within PFLU_RS25570at 5705.520 kb on - strand, within PFLU_RS25570at 5705.520 kb on - strand, within PFLU_RS25570at 5705.520 kb on - strand, within PFLU_RS25570at 5705.520 kb on - strand, within PFLU_RS25570at 5705.520 kb on - strand, within PFLU_RS25570at 5705.848 kb on + strandat 5705.849 kb on - strandat 5705.849 kb on - strandat 5705.916 kb on + strandat 5705.916 kb on + strandat 5705.916 kb on + strandat 5705.917 kb on - strandat 5705.917 kb on - strandat 5705.917 kb on - strandat 5705.917 kb on - strandat 5705.917 kb on - strandat 5705.917 kb on - strandat 5705.917 kb on - strandat 5705.917 kb on - strandat 5705.917 kb on - strandat 5705.917 kb on - strandat 5705.917 kb on - strandat 5705.942 kb on + strandat 5705.942 kb on + strandat 5705.942 kb on + strandat 5705.942 kb on + strandat 5705.942 kb on + strandat 5705.942 kb on + strandat 5705.942 kb on + strandat 5705.942 kb on + strandat 5705.943 kb on - strandat 5705.943 kb on - strandat 5705.943 kb on - strandat 5705.943 kb on - strandat 5705.973 kb on + strand, within PFLU_RS25575at 5706.005 kb on + strand, within PFLU_RS25575at 5706.005 kb on + strand, within PFLU_RS25575at 5706.005 kb on + strand, within PFLU_RS25575at 5706.005 kb on + strand, within PFLU_RS25575at 5706.005 kb on + strand, within PFLU_RS25575at 5706.005 kb on + strand, within PFLU_RS25575at 5706.006 kb on - strand, within PFLU_RS25575at 5706.006 kb on - strand, within PFLU_RS25575at 5706.006 kb on - strand, within PFLU_RS25575at 5706.006 kb on - strand, within PFLU_RS25575at 5706.006 kb on - strand, within PFLU_RS25575at 5706.006 kb on - strand, within PFLU_RS25575at 5706.107 kb on + strand, within PFLU_RS25575at 5706.107 kb on + strand, within PFLU_RS25575at 5706.108 kb on - strand, within PFLU_RS25575at 5706.108 kb on - strand, within PFLU_RS25575at 5706.256 kb on - strand, within PFLU_RS25575at 5706.256 kb on - strand, within PFLU_RS25575at 5706.742 kb on + strand, within PFLU_RS25575at 5706.742 kb on + strand, within PFLU_RS25575at 5706.743 kb on - strand, within PFLU_RS25575at 5706.743 kb on - strand, within PFLU_RS25575at 5706.743 kb on - strand, within PFLU_RS25575at 5706.743 kb on - strand, within PFLU_RS25575at 5706.743 kb on - strand, within PFLU_RS25575at 5706.743 kb on - strand, within PFLU_RS25575at 5706.792 kb on - strand, within PFLU_RS25575

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Per-strain Table

Position Strand Gene LocusTag Fraction Sucrose (C) and Glycine betaine (N); with MOPS
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5,704,341 - PFLU_RS25565 0.30 +0.1
5,704,374 + PFLU_RS25565 0.33 +0.2
5,704,374 + PFLU_RS25565 0.33 +0.3
5,704,374 + PFLU_RS25565 0.33 +0.3
5,704,375 - PFLU_RS25565 0.34 +0.4
5,704,443 + PFLU_RS25565 0.41 -0.2
5,704,443 + PFLU_RS25565 0.41 +0.6
5,704,443 + PFLU_RS25565 0.41 -1.5
5,704,444 - PFLU_RS25565 0.41 -0.8
5,704,486 + PFLU_RS25565 0.45 -0.7
5,704,487 - PFLU_RS25565 0.45 +0.2
5,704,556 + PFLU_RS25565 0.53 +0.5
5,704,557 - PFLU_RS25565 0.53 -0.4
5,704,557 - PFLU_RS25565 0.53 +0.3
5,704,563 + PFLU_RS25565 0.53 +0.1
5,704,564 - PFLU_RS25565 0.53 +0.6
5,704,564 - PFLU_RS25565 0.53 -0.3
5,704,567 + PFLU_RS25565 0.54 -0.0
5,704,567 + PFLU_RS25565 0.54 +0.5
5,704,567 + PFLU_RS25565 0.54 +0.1
5,704,567 + PFLU_RS25565 0.54 +0.2
5,704,567 + PFLU_RS25565 0.54 +1.7
5,704,568 - PFLU_RS25565 0.54 -1.8
5,704,568 - PFLU_RS25565 0.54 +0.1
5,704,568 - PFLU_RS25565 0.54 +0.7
5,704,568 - PFLU_RS25565 0.54 +0.2
5,704,568 - PFLU_RS25565 0.54 +0.4
5,704,590 + PFLU_RS25565 0.56 -1.2
5,704,590 + PFLU_RS25565 0.56 +1.9
5,704,590 + PFLU_RS25565 0.56 -0.2
5,704,590 + PFLU_RS25565 0.56 -0.3
5,704,590 + PFLU_RS25565 0.56 +0.4
5,704,590 + PFLU_RS25565 0.56 -0.0
5,704,590 + PFLU_RS25565 0.56 -0.8
5,704,590 + PFLU_RS25565 0.56 -0.9
5,704,590 + PFLU_RS25565 0.56 +0.2
5,704,591 - PFLU_RS25565 0.56 +0.4
5,704,591 - PFLU_RS25565 0.56 +0.7
5,704,591 - PFLU_RS25565 0.56 -0.7
5,704,591 - PFLU_RS25565 0.56 +0.1
5,704,591 - PFLU_RS25565 0.56 +1.8
5,704,591 - PFLU_RS25565 0.56 -0.4
5,704,591 - PFLU_RS25565 0.56 +0.0
5,704,591 - PFLU_RS25565 0.56 +0.0
5,704,591 - PFLU_RS25565 0.56 -1.6
5,704,591 - PFLU_RS25565 0.56 +1.5
5,704,594 + PFLU_RS25565 0.57 +0.8
5,704,594 + PFLU_RS25565 0.57 +0.4
5,704,594 + PFLU_RS25565 0.57 -0.0
5,704,594 + PFLU_RS25565 0.57 +1.1
5,704,594 + PFLU_RS25565 0.57 +0.2
5,704,594 + PFLU_RS25565 0.57 +1.7
5,704,594 + PFLU_RS25565 0.57 +0.7
5,704,594 + PFLU_RS25565 0.57 +0.0
5,704,594 + PFLU_RS25565 0.57 +0.9
5,704,595 - PFLU_RS25565 0.57 +0.4
5,704,595 - PFLU_RS25565 0.57 +0.4
5,704,595 - PFLU_RS25565 0.57 -0.6
5,704,595 - PFLU_RS25565 0.57 -1.5
5,704,595 - PFLU_RS25565 0.57 +0.1
5,704,595 - PFLU_RS25565 0.57 +0.5
5,704,595 - PFLU_RS25565 0.57 +0.1
5,704,595 - PFLU_RS25565 0.57 +1.2
5,704,595 - PFLU_RS25565 0.57 -1.1
5,704,595 - PFLU_RS25565 0.57 +0.0
5,704,595 - PFLU_RS25565 0.57 +0.6
5,704,595 - PFLU_RS25565 0.57 -0.3
5,704,595 - PFLU_RS25565 0.57 -0.6
5,704,595 - PFLU_RS25565 0.57 +0.1
5,704,595 - PFLU_RS25565 0.57 -0.3
5,704,598 + PFLU_RS25565 0.57 +1.1
5,704,599 - PFLU_RS25565 0.57 +0.5
5,704,599 - PFLU_RS25565 0.57 -0.4
5,704,622 + PFLU_RS25565 0.60 -0.9
5,704,622 + PFLU_RS25565 0.60 +0.1
5,704,622 + PFLU_RS25565 0.60 -0.1
5,704,622 + PFLU_RS25565 0.60 -0.5
5,704,623 - PFLU_RS25565 0.60 +0.3
5,704,623 - PFLU_RS25565 0.60 -0.2
5,704,623 - PFLU_RS25565 0.60 -0.3
5,704,623 - PFLU_RS25565 0.60 +0.4
5,704,648 - PFLU_RS25565 0.62 +0.3
5,704,677 + PFLU_RS25565 0.65 +0.1
5,704,677 + PFLU_RS25565 0.65 +0.7
5,704,821 + PFLU_RS25565 0.81 +0.6
5,704,821 + PFLU_RS25565 0.81 +0.3
5,704,825 + PFLU_RS25565 0.81 +1.5
5,704,826 - PFLU_RS25565 0.81 -0.1
5,704,826 - PFLU_RS25565 0.81 -0.7
5,704,837 + PFLU_RS25565 0.82 +0.1
5,704,838 - PFLU_RS25565 0.82 +0.4
5,704,838 - PFLU_RS25565 0.82 +0.3
5,704,838 - PFLU_RS25565 0.82 +0.0
5,704,996 + +1.1
5,705,015 + +1.8
5,705,085 - +0.8
5,705,118 - +0.1
5,705,118 - +0.7
5,705,255 + -0.2
5,705,255 + +0.3
5,705,310 + +0.3
5,705,310 + -1.2
5,705,310 + +0.6
5,705,310 + -1.4
5,705,357 - -0.8
5,705,490 + PFLU_RS25570 0.32 -2.7
5,705,519 + PFLU_RS25570 0.38 +0.5
5,705,519 + PFLU_RS25570 0.38 +0.8
5,705,519 + PFLU_RS25570 0.38 -0.6
5,705,519 + PFLU_RS25570 0.38 +0.2
5,705,520 - PFLU_RS25570 0.39 -0.1
5,705,520 - PFLU_RS25570 0.39 +1.5
5,705,520 - PFLU_RS25570 0.39 -0.4
5,705,520 - PFLU_RS25570 0.39 +1.0
5,705,520 - PFLU_RS25570 0.39 +1.8
5,705,520 - PFLU_RS25570 0.39 +1.2
5,705,848 + +1.1
5,705,849 - -0.2
5,705,849 - +0.6
5,705,916 + +1.3
5,705,916 + -0.5
5,705,916 + +0.9
5,705,917 - -1.6
5,705,917 - -0.2
5,705,917 - +0.3
5,705,917 - +1.1
5,705,917 - -0.4
5,705,917 - -1.1
5,705,917 - -1.6
5,705,917 - -0.1
5,705,917 - +0.3
5,705,917 - +0.7
5,705,917 - -1.3
5,705,942 + +0.1
5,705,942 + +0.7
5,705,942 + +0.4
5,705,942 + +0.9
5,705,942 + +0.1
5,705,942 + +0.1
5,705,942 + +0.1
5,705,942 + -0.4
5,705,943 - +0.7
5,705,943 - +1.3
5,705,943 - -0.2
5,705,943 - -0.7
5,705,973 + PFLU_RS25575 0.11 -1.3
5,706,005 + PFLU_RS25575 0.14 -0.8
5,706,005 + PFLU_RS25575 0.14 -0.1
5,706,005 + PFLU_RS25575 0.14 +0.3
5,706,005 + PFLU_RS25575 0.14 +1.6
5,706,005 + PFLU_RS25575 0.14 -0.0
5,706,005 + PFLU_RS25575 0.14 -1.3
5,706,006 - PFLU_RS25575 0.14 +0.2
5,706,006 - PFLU_RS25575 0.14 +0.3
5,706,006 - PFLU_RS25575 0.14 +1.5
5,706,006 - PFLU_RS25575 0.14 -1.2
5,706,006 - PFLU_RS25575 0.14 +1.1
5,706,006 - PFLU_RS25575 0.14 +0.5
5,706,107 + PFLU_RS25575 0.22 -0.7
5,706,107 + PFLU_RS25575 0.22 +0.6
5,706,108 - PFLU_RS25575 0.22 -0.1
5,706,108 - PFLU_RS25575 0.22 +0.2
5,706,256 - PFLU_RS25575 0.33 -0.5
5,706,256 - PFLU_RS25575 0.33 +0.3
5,706,742 + PFLU_RS25575 0.72 -0.4
5,706,742 + PFLU_RS25575 0.72 -0.9
5,706,743 - PFLU_RS25575 0.72 -0.5
5,706,743 - PFLU_RS25575 0.72 +1.3
5,706,743 - PFLU_RS25575 0.72 +0.1
5,706,743 - PFLU_RS25575 0.72 -1.6
5,706,743 - PFLU_RS25575 0.72 +0.4
5,706,743 - PFLU_RS25575 0.72 -0.1
5,706,792 - PFLU_RS25575 0.76 -0.6

Or see this region's nucleotide sequence