Strain Fitness in Pseudomonas fluorescens SBW25-INTG around PFLU_RS28465

Experiment: p-Coumaric (C) and Ammonium chloride (N); with TAPS

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	p-Coumaric (C) and Ammonium chloride (N); with TAPS
6,331,977	+		PFLU_RS28460	0.37	-2.6
6,331,977	+		PFLU_RS28460	0.37	-0.9
6,331,978	-		PFLU_RS28460	0.37	-0.1
6,331,978	-		PFLU_RS28460	0.37	-0.6
6,331,978	-		PFLU_RS28460	0.37	-0.8
6,331,978	-		PFLU_RS28460	0.37	-1.1
6,331,978	-		PFLU_RS28460	0.37	-0.9
6,331,978	-		PFLU_RS28460	0.37	-2.0
6,331,978	-		PFLU_RS28460	0.37	-1.3
6,332,085	+		PFLU_RS28460	0.45	-1.6
6,332,086	-		PFLU_RS28460	0.45	-2.0
6,332,097	+		PFLU_RS28460	0.46	-1.2
6,332,097	+		PFLU_RS28460	0.46	+0.1
6,332,097	+		PFLU_RS28460	0.46	-0.6
6,332,097	+		PFLU_RS28460	0.46	-1.2
6,332,097	+		PFLU_RS28460	0.46	+0.3
6,332,097	+		PFLU_RS28460	0.46	-1.9
6,332,097	+		PFLU_RS28460	0.46	+0.1
6,332,097	+		PFLU_RS28460	0.46	+0.1
6,332,098	-		PFLU_RS28460	0.46	-1.2
6,332,098	-		PFLU_RS28460	0.46	-1.6
6,332,098	-		PFLU_RS28460	0.46	-3.3
6,332,098	-		PFLU_RS28460	0.46	-0.2
6,332,098	-		PFLU_RS28460	0.46	-1.9
6,332,101	+		PFLU_RS28460	0.46	-0.5
6,332,101	+		PFLU_RS28460	0.46	-0.9
6,332,101	+		PFLU_RS28460	0.46	+0.1
6,332,102	-		PFLU_RS28460	0.46	-0.3
6,332,102	-		PFLU_RS28460	0.46	-3.5
6,332,173	-		PFLU_RS28460	0.51	-2.8
6,332,200	+		PFLU_RS28460	0.53	-0.0
6,332,200	+		PFLU_RS28460	0.53	-1.8
6,332,200	+		PFLU_RS28460	0.53	+0.6
6,332,201	-		PFLU_RS28460	0.53	-0.3
6,332,201	-		PFLU_RS28460	0.53	-1.9
6,332,201	-		PFLU_RS28460	0.53	-0.3
6,332,201	-		PFLU_RS28460	0.53	-3.6
6,332,201	-		PFLU_RS28460	0.53	-0.2
6,332,201	-		PFLU_RS28460	0.53	+0.3
6,332,201	-		PFLU_RS28460	0.53	-2.4
6,332,201	-		PFLU_RS28460	0.53	+0.2
6,332,201	-		PFLU_RS28460	0.53	-1.3
6,332,302	+		PFLU_RS28460	0.61	+0.6
6,332,380	-		PFLU_RS28460	0.67	-1.9
6,332,390	+		PFLU_RS28460	0.67	-0.1
6,332,390	+		PFLU_RS28460	0.67	-1.2
6,332,390	+		PFLU_RS28460	0.67	-2.8
6,332,390	+		PFLU_RS28460	0.67	-0.9
6,332,390	+		PFLU_RS28460	0.67	-1.4
6,332,390	+		PFLU_RS28460	0.67	+0.1
6,332,390	+		PFLU_RS28460	0.67	-1.3
6,332,390	+		PFLU_RS28460	0.67	-1.4
6,332,391	-		PFLU_RS28460	0.67	-0.6
6,332,391	-		PFLU_RS28460	0.67	-0.4
6,332,391	-		PFLU_RS28460	0.67	+1.1
6,332,391	-		PFLU_RS28460	0.67	-1.1
6,332,391	-		PFLU_RS28460	0.67	-0.6
6,332,391	-		PFLU_RS28460	0.67	-2.2
6,332,391	-		PFLU_RS28460	0.67	-1.8
6,332,391	-		PFLU_RS28460	0.67	-2.8
6,332,391	-		PFLU_RS28460	0.67	-2.6
6,332,445	+		PFLU_RS28460	0.71	+2.8
6,332,445	+		PFLU_RS28460	0.71	-1.4
6,332,445	+		PFLU_RS28460	0.71	-1.2
6,332,445	+		PFLU_RS28460	0.71	-2.5
6,332,446	-		PFLU_RS28460	0.72	-1.1
6,332,446	-		PFLU_RS28460	0.72	-1.0
6,332,446	-		PFLU_RS28460	0.72	-1.9
6,332,446	-		PFLU_RS28460	0.72	-1.1
6,332,446	-		PFLU_RS28460	0.72	-1.0
6,332,446	-		PFLU_RS28460	0.72	-2.3
6,332,446	-		PFLU_RS28460	0.72	+2.6
6,332,446	-		PFLU_RS28460	0.72	+0.9
6,332,455	-		PFLU_RS28460	0.72	-3.1
6,332,455	-		PFLU_RS28460	0.72	-1.1
6,332,455	-		PFLU_RS28460	0.72	-1.1
6,332,455	-		PFLU_RS28460	0.72	+1.3
6,332,455	-		PFLU_RS28460	0.72	-0.9
6,332,456	+		PFLU_RS28460	0.72	-1.4
6,332,456	+		PFLU_RS28460	0.72	-2.1
6,332,457	-		PFLU_RS28460	0.72	-1.1
6,332,628	+		PFLU_RS28460	0.85	-2.4
6,332,628	+		PFLU_RS28460	0.85	-1.8
6,332,628	+		PFLU_RS28460	0.85	-2.3
6,332,629	-		PFLU_RS28460	0.85	-1.1
6,332,629	-		PFLU_RS28460	0.85	-1.8
6,332,769	+				-1.8
6,332,769	+				-0.6
6,332,769	+				-2.1
6,332,769	+				-1.7
6,332,770	-				+0.9
6,332,770	-				-0.9
6,332,770	-				-0.4
6,332,770	-				-2.3
6,332,899	+				-1.3
6,332,899	+				+0.3
6,332,899	+				-0.3
6,332,899	+				-3.5
6,332,900	-				-1.7
6,332,900	-				-2.6
6,332,900	-				-1.6
6,332,900	-				-1.7
6,332,900	-				-2.0
6,332,900	-				-2.1
6,333,134	+		PFLU_RS28465	0.21	-3.0
6,333,134	+		PFLU_RS28465	0.21	-0.3
6,333,135	-		PFLU_RS28465	0.21	+0.5
6,333,403	+		PFLU_RS28465	0.39	-0.2
6,333,403	+		PFLU_RS28465	0.39	-0.8
6,333,473	-		PFLU_RS28465	0.44	-1.6
6,333,553	+		PFLU_RS28465	0.49	+0.0
6,333,553	+		PFLU_RS28465	0.49	-2.2
6,333,553	+		PFLU_RS28465	0.49	-2.0
6,333,553	+		PFLU_RS28465	0.49	-2.2
6,333,553	+		PFLU_RS28465	0.49	-0.2
6,333,553	+		PFLU_RS28465	0.49	-0.9
6,333,553	+		PFLU_RS28465	0.49	-0.8
6,333,553	+		PFLU_RS28465	0.49	-1.3
6,333,553	+		PFLU_RS28465	0.49	-1.0
6,333,553	+		PFLU_RS28465	0.49	-2.6
6,333,554	-		PFLU_RS28465	0.49	-1.7
6,333,554	-		PFLU_RS28465	0.49	-0.8
6,333,554	-		PFLU_RS28465	0.49	-2.1
6,333,554	-		PFLU_RS28465	0.49	-0.1
6,333,554	-		PFLU_RS28465	0.49	-1.0
6,333,554	-		PFLU_RS28465	0.49	+0.4
6,333,554	-		PFLU_RS28465	0.49	+0.4
6,333,554	-		PFLU_RS28465	0.49	-1.6
6,333,554	-		PFLU_RS28465	0.49	+0.0
6,333,554	-		PFLU_RS28465	0.49	-0.7
6,333,776	-		PFLU_RS28465	0.64	-1.5
6,333,776	-		PFLU_RS28465	0.64	-1.9
6,333,868	+		PFLU_RS28465	0.70	-1.4
6,333,868	+		PFLU_RS28465	0.70	-1.7
6,333,878	-		PFLU_RS28465	0.71	-1.5
6,333,878	-		PFLU_RS28465	0.71	+0.1
6,333,902	+		PFLU_RS28465	0.72	-0.8
6,333,988	+		PFLU_RS28465	0.78	-2.4
6,333,988	+		PFLU_RS28465	0.78	-0.1
6,333,989	-		PFLU_RS28465	0.78	-2.0
6,334,111	+		PFLU_RS28465	0.86	+0.1
6,334,111	+		PFLU_RS28465	0.86	-1.8
6,334,111	+		PFLU_RS28465	0.86	+1.5
6,334,111	+		PFLU_RS28465	0.86	-3.0
6,334,111	+		PFLU_RS28465	0.86	+0.2
6,334,111	+		PFLU_RS28465	0.86	-3.7
6,334,111	+		PFLU_RS28465	0.86	-1.7
6,334,111	+		PFLU_RS28465	0.86	-2.9
6,334,111	+		PFLU_RS28465	0.86	+2.4
6,334,111	+		PFLU_RS28465	0.86	-0.8
6,334,111	+		PFLU_RS28465	0.86	-0.8
6,334,111	+		PFLU_RS28465	0.86	-1.8
6,334,111	+		PFLU_RS28465	0.86	-0.6
6,334,111	+		PFLU_RS28465	0.86	-1.4
6,334,112	-		PFLU_RS28465	0.86	-0.9
6,334,112	-		PFLU_RS28465	0.86	-1.9
6,334,112	-		PFLU_RS28465	0.86	-2.0
6,334,112	-		PFLU_RS28465	0.86	-1.7
6,334,112	-		PFLU_RS28465	0.86	-1.3
6,334,112	-		PFLU_RS28465	0.86	-0.2
6,334,112	-		PFLU_RS28465	0.86	-2.3
6,334,112	-		PFLU_RS28465	0.86	+0.1
6,334,112	-		PFLU_RS28465	0.86	-0.3
6,334,112	-		PFLU_RS28465	0.86	+0.1
6,334,112	-		PFLU_RS28465	0.86	-0.1
6,334,112	-		PFLU_RS28465	0.86	-2.3
6,334,112	-		PFLU_RS28465	0.86	-0.2
6,334,112	-		PFLU_RS28465	0.86	-2.1
6,334,113	+		PFLU_RS28465	0.86	+0.5
6,334,114	-		PFLU_RS28465	0.87	-0.7
6,334,129	+		PFLU_RS28465	0.88	-0.8
6,334,129	+		PFLU_RS28465	0.88	-0.0
6,334,129	+		PFLU_RS28465	0.88	+1.3
6,334,129	+		PFLU_RS28465	0.88	-2.1
6,334,129	+		PFLU_RS28465	0.88	-1.3
6,334,129	+		PFLU_RS28465	0.88	-0.8
6,334,130	-		PFLU_RS28465	0.88	-1.4
6,334,130	-		PFLU_RS28465	0.88	-0.5
6,334,130	-		PFLU_RS28465	0.88	-1.9
6,334,130	-		PFLU_RS28465	0.88	+0.9
6,334,130	-		PFLU_RS28465	0.88	-2.5
6,334,169	+				+1.3
6,334,169	+				-0.4
6,334,169	+				-2.2
6,334,169	+				+0.4
6,334,169	+				+0.1
6,334,169	+				-2.8
6,334,169	+				-0.9
6,334,169	+				-0.0
6,334,169	+				-2.0
6,334,169	+				-2.9
6,334,170	-				-0.3
6,334,170	-				-0.1
6,334,170	-				-0.8
6,334,170	-				-1.3
6,334,170	-				-2.1
6,334,170	-				-0.4
6,334,170	-				+2.0
6,334,170	-				-0.0
6,334,170	-				-2.7
6,334,170	-				+0.3
6,334,276	-				-0.6
6,334,313	-				+0.3
6,334,358	+				-1.4
6,334,358	+				-2.5
6,334,359	-				+1.1
6,334,359	-				+0.4
6,334,429	+		PFLU_RS28470	0.19	-0.6
6,334,429	+		PFLU_RS28470	0.19	+0.3
6,334,488	+		PFLU_RS28470	0.28	-0.4
6,334,488	+		PFLU_RS28470	0.28	-1.2
6,334,488	+		PFLU_RS28470	0.28	-2.1
6,334,489	-		PFLU_RS28470	0.28	-1.6
6,334,489	-		PFLU_RS28470	0.28	-2.3
6,334,489	-		PFLU_RS28470	0.28	+0.4
6,334,704	+		PFLU_RS28470	0.63	+0.6
6,334,704	+		PFLU_RS28470	0.63	-0.1
6,334,705	-		PFLU_RS28470	0.63	+1.0
6,334,705	-		PFLU_RS28470	0.63	-0.9
6,334,705	-		PFLU_RS28470	0.63	-0.8
6,334,806	+		PFLU_RS28470	0.80	+0.2
6,334,806	+		PFLU_RS28470	0.80	-1.6
6,334,806	+		PFLU_RS28470	0.80	+1.5
6,334,806	+		PFLU_RS28470	0.80	-1.3
6,334,806	+		PFLU_RS28470	0.80	-2.6
6,334,806	+		PFLU_RS28470	0.80	-0.9
6,334,806	+		PFLU_RS28470	0.80	-1.6
6,334,807	-		PFLU_RS28470	0.80	-0.6
6,334,807	-		PFLU_RS28470	0.80	-0.2
6,334,807	-		PFLU_RS28470	0.80	-1.4
6,334,807	-		PFLU_RS28470	0.80	-0.7
6,334,807	-		PFLU_RS28470	0.80	-1.5
6,334,807	-		PFLU_RS28470	0.80	-0.8
6,334,832	+		PFLU_RS28470	0.84	-0.9
6,334,832	+		PFLU_RS28470	0.84	-1.0
6,334,833	-		PFLU_RS28470	0.84	-1.6
6,334,890	+				-0.8
6,334,890	+				-0.7
6,334,890	+				-1.0
6,334,890	+				-0.8
6,334,890	+				+0.6
6,334,890	+				-2.1
6,334,890	+				-1.6
6,334,890	+				-1.0
6,334,890	+				-0.4
6,334,890	+				-0.4
6,334,891	-				-1.8
6,334,891	-				+0.5
6,334,891	-				-0.1
6,334,891	-				-0.9
6,334,891	-				-1.4
6,334,891	-				-0.3
6,334,891	-				-0.9
6,334,891	-				-0.9
6,334,891	-				-1.0
6,334,891	-				-0.4
6,334,891	-				-0.8
6,334,891	-				-2.1
6,334,893	+				+0.3
6,334,893	+				-0.2
6,334,894	-				-1.2
6,334,894	-				-1.7
6,334,894	-				-2.0
6,335,022	+				-0.9
6,335,022	+				+0.0
6,335,022	-				+0.9
6,335,023	-				+0.6
6,335,023	-				-0.8
6,335,050	-				+1.9