Strain Fitness in Pseudomonas fluorescens SBW25-INTG around PFLU_RS12830

Experiment: p-Coumaric (C) and Ammonium chloride (N); with TAPS

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	p-Coumaric (C) and Ammonium chloride (N); with TAPS
2,890,928	+		PFLU_RS12820	0.43	-0.0
2,890,929	-		PFLU_RS12820	0.43	+2.0
2,890,940	+		PFLU_RS12820	0.44	-0.9
2,890,940	+		PFLU_RS12820	0.44	-1.2
2,890,941	-		PFLU_RS12820	0.44	+1.4
2,890,941	-		PFLU_RS12820	0.44	+1.0
2,890,941	-		PFLU_RS12820	0.44	+0.0
2,891,007	+		PFLU_RS12820	0.51	-0.1
2,891,007	+		PFLU_RS12820	0.51	-0.1
2,891,007	+		PFLU_RS12820	0.51	-0.0
2,891,007	+		PFLU_RS12820	0.51	+1.1
2,891,007	+		PFLU_RS12820	0.51	+0.4
2,891,007	+		PFLU_RS12820	0.51	-0.4
2,891,008	-		PFLU_RS12820	0.51	+0.7
2,891,008	-		PFLU_RS12820	0.51	+0.8
2,891,008	-		PFLU_RS12820	0.51	-0.4
2,891,008	-		PFLU_RS12820	0.51	-0.2
2,891,008	-		PFLU_RS12820	0.51	-1.7
2,891,052	-		PFLU_RS12820	0.56	-0.4
2,891,165	+		PFLU_RS12820	0.69	+2.0
2,891,305	+		PFLU_RS12820	0.84	-0.3
2,891,306	-		PFLU_RS12820	0.84	-0.2
2,891,739	+		PFLU_RS12825	0.61	+0.3
2,891,739	+		PFLU_RS12825	0.61	-0.2
2,891,740	-		PFLU_RS12825	0.62	+0.7
2,891,740	-		PFLU_RS12825	0.62	+0.1
2,891,740	-		PFLU_RS12825	0.62	-1.2
2,891,740	-		PFLU_RS12825	0.62	-0.4
2,891,740	-		PFLU_RS12825	0.62	+0.5
2,891,824	+				-0.6
2,891,824	+				-1.2
2,891,824	+				+1.8
2,891,825	-				+0.8
2,891,853	+				-0.3
2,891,878	+				+0.2
2,892,198	+		PFLU_RS12830	0.12	-1.6
2,892,198	+		PFLU_RS12830	0.12	-0.2
2,892,198	+		PFLU_RS12830	0.12	-0.3
2,892,199	-		PFLU_RS12830	0.12	-2.0
2,892,199	-		PFLU_RS12830	0.12	+1.8
2,892,199	-		PFLU_RS12830	0.12	-1.0
2,892,315	-		PFLU_RS12830	0.17	-1.9
2,892,315	-		PFLU_RS12830	0.17	-0.3
2,892,315	-		PFLU_RS12830	0.17	-0.1
2,892,334	+		PFLU_RS12830	0.18	-0.8
2,892,334	+		PFLU_RS12830	0.18	-0.7
2,892,334	+		PFLU_RS12830	0.18	-0.9
2,892,335	-		PFLU_RS12830	0.18	-0.9
2,892,409	+		PFLU_RS12830	0.21	-3.4
2,892,586	+		PFLU_RS12830	0.28	-1.3
2,892,587	-		PFLU_RS12830	0.28	-1.5
2,892,587	-		PFLU_RS12830	0.28	-2.0
2,892,610	-		PFLU_RS12830	0.29	-0.1
2,892,610	-		PFLU_RS12830	0.29	-0.9
2,892,734	+		PFLU_RS12830	0.34	-2.6
2,892,734	+		PFLU_RS12830	0.34	-4.1
2,892,926	+		PFLU_RS12830	0.42	+0.4
2,892,926	+		PFLU_RS12830	0.42	-2.0
2,892,928	+		PFLU_RS12830	0.42	+1.7
2,892,928	+		PFLU_RS12830	0.42	-3.5
2,892,928	+		PFLU_RS12830	0.42	-1.2
2,892,928	+		PFLU_RS12830	0.42	-0.3
2,892,928	+		PFLU_RS12830	0.42	-2.2
2,892,928	+		PFLU_RS12830	0.42	-0.8
2,892,929	-		PFLU_RS12830	0.42	-0.3
2,892,929	-		PFLU_RS12830	0.42	-1.6
2,892,929	-		PFLU_RS12830	0.42	-1.5
2,892,929	-		PFLU_RS12830	0.42	+0.4
2,892,929	-		PFLU_RS12830	0.42	-1.5
2,893,146	-		PFLU_RS12830	0.50	-0.9
2,893,204	+		PFLU_RS12830	0.53	+0.5
2,893,204	+		PFLU_RS12830	0.53	-1.0
2,893,204	+		PFLU_RS12830	0.53	+0.2
2,893,204	+		PFLU_RS12830	0.53	-0.5
2,893,204	+		PFLU_RS12830	0.53	-2.2
2,893,204	+		PFLU_RS12830	0.53	-1.0
2,893,204	+		PFLU_RS12830	0.53	-0.7
2,893,204	+		PFLU_RS12830	0.53	-0.7
2,893,204	+		PFLU_RS12830	0.53	-1.5
2,893,205	-		PFLU_RS12830	0.53	-2.3
2,893,205	-		PFLU_RS12830	0.53	-2.3
2,893,246	+		PFLU_RS12830	0.54	-1.7
2,893,246	+		PFLU_RS12830	0.54	-1.9
2,893,246	+		PFLU_RS12830	0.54	-0.2
2,893,247	-		PFLU_RS12830	0.54	-2.0
2,893,247	-		PFLU_RS12830	0.54	-0.1
2,893,247	-		PFLU_RS12830	0.54	-0.5
2,893,247	-		PFLU_RS12830	0.54	-0.9
2,893,247	-		PFLU_RS12830	0.54	-1.2
2,893,354	+		PFLU_RS12830	0.59	-3.1
2,893,355	-		PFLU_RS12830	0.59	-3.4
2,893,355	-		PFLU_RS12830	0.59	+0.7
2,893,355	-		PFLU_RS12830	0.59	+0.5
2,893,355	-		PFLU_RS12830	0.59	-2.1
2,893,355	-		PFLU_RS12830	0.59	-0.6
2,893,355	-		PFLU_RS12830	0.59	-3.2
2,893,355	-		PFLU_RS12830	0.59	-0.8
2,893,393	+		PFLU_RS12830	0.60	-2.0
2,893,418	-		PFLU_RS12830	0.61	-2.7
2,893,430	-		PFLU_RS12830	0.62	-1.3
2,893,471	+		PFLU_RS12830	0.63	-1.7
2,893,612	+		PFLU_RS12830	0.69	+0.5
2,893,612	+		PFLU_RS12830	0.69	-1.9
2,893,612	+		PFLU_RS12830	0.69	-1.5
2,893,612	+		PFLU_RS12830	0.69	+0.3
2,893,612	+		PFLU_RS12830	0.69	+0.7
2,893,613	-		PFLU_RS12830	0.69	-2.7
2,893,613	-		PFLU_RS12830	0.69	-0.8
2,893,613	-		PFLU_RS12830	0.69	-0.2
2,893,613	-		PFLU_RS12830	0.69	-2.3
2,893,613	-		PFLU_RS12830	0.69	-1.5
2,893,613	-		PFLU_RS12830	0.69	-2.4
2,893,613	-		PFLU_RS12830	0.69	+0.8
2,893,613	-		PFLU_RS12830	0.69	-0.5
2,893,613	-		PFLU_RS12830	0.69	-2.1
2,893,670	-		PFLU_RS12830	0.71	-1.5
2,893,759	+		PFLU_RS12830	0.75	-2.7
2,893,760	-		PFLU_RS12830	0.75	-2.8
2,893,760	-		PFLU_RS12830	0.75	-1.0
2,893,810	+		PFLU_RS12830	0.77	-2.1
2,894,002	+		PFLU_RS12830	0.85	-1.2
2,894,002	+		PFLU_RS12830	0.85	-0.9
2,894,002	+		PFLU_RS12830	0.85	-0.6
2,894,002	+		PFLU_RS12830	0.85	-0.2
2,894,002	+		PFLU_RS12830	0.85	-2.0
2,894,002	+		PFLU_RS12830	0.85	+0.0
2,894,003	-		PFLU_RS12830	0.85	-2.0
2,894,003	-		PFLU_RS12830	0.85	-1.0
2,894,003	-		PFLU_RS12830	0.85	-1.1
2,894,072	+		PFLU_RS12830	0.87	-0.5
2,894,072	+		PFLU_RS12830	0.87	-1.8
2,894,073	-		PFLU_RS12830	0.88	-0.9
2,894,073	-		PFLU_RS12830	0.88	-2.8
2,894,101	+		PFLU_RS12830	0.89	-2.1
2,894,101	+		PFLU_RS12830	0.89	-3.1
2,894,101	+		PFLU_RS12830	0.89	-1.1
2,894,102	-		PFLU_RS12830	0.89	-0.4
2,894,102	-		PFLU_RS12830	0.89	-2.6
2,894,102	-		PFLU_RS12830	0.89	-1.2
2,894,206	+				-1.6
2,894,206	+				+0.5
2,894,207	-				-1.6
2,894,386	+				-0.4
2,894,386	+				-2.9
2,894,386	+				-2.9
2,894,387	-				-2.4
2,894,387	-				-0.0
2,894,387	-				-0.8
2,894,387	-				-2.3
2,894,401	+				-1.8
2,894,456	-				+0.2
2,894,456	-				-0.5
2,894,468	+				+1.0
2,894,796	+		PFLU_RS12835	0.14	+1.3
2,894,796	+		PFLU_RS12835	0.14	+0.9
2,894,796	+		PFLU_RS12835	0.14	+0.3
2,894,797	-		PFLU_RS12835	0.14	+0.4
2,894,797	-		PFLU_RS12835	0.14	-0.9
2,894,797	-		PFLU_RS12835	0.14	+1.3
2,894,867	-		PFLU_RS12835	0.18	-0.2
2,894,962	+		PFLU_RS12835	0.23	+2.1
2,894,963	-		PFLU_RS12835	0.23	-0.6
2,895,001	+		PFLU_RS12835	0.25	+1.4
2,895,002	-		PFLU_RS12835	0.25	-2.4
2,895,265	+		PFLU_RS12835	0.38	-0.6
2,895,266	-		PFLU_RS12835	0.38	+0.7
2,895,271	+		PFLU_RS12835	0.38	-0.3
2,895,271	+		PFLU_RS12835	0.38	+0.4
2,895,271	+		PFLU_RS12835	0.38	-0.2
2,895,271	+		PFLU_RS12835	0.38	+2.8
2,895,272	-		PFLU_RS12835	0.38	-1.3
2,895,272	-		PFLU_RS12835	0.38	-0.8
2,895,272	-		PFLU_RS12835	0.38	+0.1
2,895,277	+		PFLU_RS12835	0.39	-0.0
2,895,277	+		PFLU_RS12835	0.39	-0.4
2,895,277	+		PFLU_RS12835	0.39	+1.7
2,895,277	+		PFLU_RS12835	0.39	+0.1
2,895,277	+		PFLU_RS12835	0.39	-1.3
2,895,278	-		PFLU_RS12835	0.39	-0.2
2,895,278	-		PFLU_RS12835	0.39	-1.0
2,895,278	-		PFLU_RS12835	0.39	-0.4