Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS14120

Experiment: 2-Deoxyadenosine 5-monophosphate 5 mM (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBWI76_RS14110 and BWI76_RS14115 are separated by 79 nucleotidesBWI76_RS14115 and BWI76_RS14120 are separated by 317 nucleotidesBWI76_RS14120 and BWI76_RS14125 are separated by 50 nucleotides BWI76_RS14110: BWI76_RS14110 - C-lysozyme inhibitor, at 2,949,744 to 2,950,187 _RS14110 BWI76_RS14115: BWI76_RS14115 - YqaE/Pmp3 family membrane protein, at 2,950,267 to 2,950,428 _RS14115 BWI76_RS14120: BWI76_RS14120 - hypothetical protein, at 2,950,746 to 2,950,976 _RS14120 BWI76_RS14125: BWI76_RS14125 - SDR family oxidoreductase, at 2,951,027 to 2,951,911 _RS14125 Position (kb) 2950 2951Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 2949.850 kb on - strand, within BWI76_RS14110at 2949.850 kb on - strand, within BWI76_RS14110at 2949.850 kb on - strand, within BWI76_RS14110at 2949.962 kb on - strand, within BWI76_RS14110at 2950.045 kb on - strand, within BWI76_RS14110at 2950.123 kb on - strand, within BWI76_RS14110at 2950.186 kb on - strandat 2950.197 kb on - strandat 2950.197 kb on - strandat 2950.197 kb on - strandat 2950.258 kb on - strandat 2950.313 kb on - strand, within BWI76_RS14115at 2950.313 kb on - strandat 2950.313 kb on - strand, within BWI76_RS14115at 2950.357 kb on + strand, within BWI76_RS14115at 2950.363 kb on + strand, within BWI76_RS14115at 2950.363 kb on + strand, within BWI76_RS14115at 2950.365 kb on - strand, within BWI76_RS14115at 2950.365 kb on - strand, within BWI76_RS14115at 2950.371 kb on - strand, within BWI76_RS14115at 2950.371 kb on - strand, within BWI76_RS14115at 2950.371 kb on - strand, within BWI76_RS14115at 2950.371 kb on - strand, within BWI76_RS14115at 2950.371 kb on - strand, within BWI76_RS14115at 2950.371 kb on - strand, within BWI76_RS14115at 2950.372 kb on - strand, within BWI76_RS14115at 2950.372 kb on - strand, within BWI76_RS14115at 2950.372 kb on - strand, within BWI76_RS14115at 2950.372 kb on - strand, within BWI76_RS14115at 2950.372 kb on - strand, within BWI76_RS14115at 2950.372 kb on - strand, within BWI76_RS14115at 2950.372 kb on - strand, within BWI76_RS14115at 2950.372 kb on - strand, within BWI76_RS14115at 2950.372 kb on - strand, within BWI76_RS14115at 2950.372 kb on - strand, within BWI76_RS14115at 2950.372 kb on - strand, within BWI76_RS14115at 2950.372 kb on - strand, within BWI76_RS14115at 2950.372 kb on - strand, within BWI76_RS14115at 2950.372 kb on - strand, within BWI76_RS14115at 2950.372 kb on - strand, within BWI76_RS14115at 2950.372 kb on - strand, within BWI76_RS14115at 2950.372 kb on - strand, within BWI76_RS14115at 2950.372 kb on - strand, within BWI76_RS14115at 2950.372 kb on - strand, within BWI76_RS14115at 2950.372 kb on - strand, within BWI76_RS14115at 2950.375 kb on - strand, within BWI76_RS14115at 2950.382 kb on - strand, within BWI76_RS14115at 2950.382 kb on - strand, within BWI76_RS14115at 2950.382 kb on - strand, within BWI76_RS14115at 2950.382 kb on - strand, within BWI76_RS14115at 2950.438 kb on - strandat 2950.461 kb on - strandat 2950.595 kb on - strandat 2950.629 kb on + strandat 2950.631 kb on + strandat 2950.631 kb on + strandat 2950.639 kb on - strandat 2950.647 kb on + strandat 2950.666 kb on + strandat 2950.673 kb on + strandat 2950.673 kb on + strandat 2950.673 kb on + strandat 2950.689 kb on + strandat 2950.697 kb on - strandat 2950.717 kb on + strandat 2950.751 kb on - strandat 2950.753 kb on + strandat 2950.753 kb on + strandat 2950.763 kb on + strandat 2950.771 kb on - strand, within BWI76_RS14120at 2950.785 kb on + strand, within BWI76_RS14120at 2950.800 kb on + strand, within BWI76_RS14120at 2950.800 kb on + strand, within BWI76_RS14120at 2950.808 kb on - strand, within BWI76_RS14120at 2950.808 kb on - strand, within BWI76_RS14120at 2950.808 kb on - strand, within BWI76_RS14120at 2950.809 kb on + strand, within BWI76_RS14120at 2950.809 kb on + strand, within BWI76_RS14120at 2950.831 kb on + strand, within BWI76_RS14120at 2950.837 kb on + strand, within BWI76_RS14120at 2950.837 kb on + strand, within BWI76_RS14120at 2950.901 kb on + strand, within BWI76_RS14120at 2950.904 kb on + strand, within BWI76_RS14120at 2950.909 kb on - strand, within BWI76_RS14120at 2951.063 kb on - strandat 2951.201 kb on + strand, within BWI76_RS14125at 2951.201 kb on + strand, within BWI76_RS14125at 2951.366 kb on + strand, within BWI76_RS14125at 2951.379 kb on + strand, within BWI76_RS14125at 2951.457 kb on - strand, within BWI76_RS14125at 2951.515 kb on + strand, within BWI76_RS14125at 2951.525 kb on - strand, within BWI76_RS14125at 2951.622 kb on + strand, within BWI76_RS14125at 2951.624 kb on - strand, within BWI76_RS14125at 2951.630 kb on - strand, within BWI76_RS14125at 2951.630 kb on - strand, within BWI76_RS14125at 2951.630 kb on - strand, within BWI76_RS14125at 2951.630 kb on - strand, within BWI76_RS14125at 2951.650 kb on + strand, within BWI76_RS14125at 2951.687 kb on + strand, within BWI76_RS14125at 2951.711 kb on + strand, within BWI76_RS14125at 2951.716 kb on - strand, within BWI76_RS14125at 2951.796 kb on + strand, within BWI76_RS14125at 2951.836 kb on + strandat 2951.857 kb on + strandat 2951.874 kb on + strandat 2951.877 kb on + strandat 2951.882 kb on + strandat 2951.882 kb on + strandat 2951.882 kb on + strandat 2951.882 kb on + strandat 2951.882 kb on + strandat 2951.882 kb on + strandat 2951.885 kb on - strandat 2951.890 kb on - strandat 2951.890 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction 2-Deoxyadenosine 5-monophosphate 5 mM (C)
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2,949,850 - BWI76_RS14110 0.24 +0.1
2,949,850 - BWI76_RS14110 0.24 -1.4
2,949,850 - BWI76_RS14110 0.24 -1.4
2,949,962 - BWI76_RS14110 0.49 +0.4
2,950,045 - BWI76_RS14110 0.68 -2.2
2,950,123 - BWI76_RS14110 0.85 +2.1
2,950,186 - -0.8
2,950,197 - -0.1
2,950,197 - +1.6
2,950,197 - -1.8
2,950,258 - -2.2
2,950,313 - BWI76_RS14115 0.28 -1.0
2,950,313 - +3.5
2,950,313 - BWI76_RS14115 0.28 +1.4
2,950,357 + BWI76_RS14115 0.56 -1.4
2,950,363 + BWI76_RS14115 0.59 +1.7
2,950,363 + BWI76_RS14115 0.59 +1.6
2,950,365 - BWI76_RS14115 0.60 -0.5
2,950,365 - BWI76_RS14115 0.60 -3.2
2,950,371 - BWI76_RS14115 0.64 +0.9
2,950,371 - BWI76_RS14115 0.64 -0.2
2,950,371 - BWI76_RS14115 0.64 -0.6
2,950,371 - BWI76_RS14115 0.64 +0.0
2,950,371 - BWI76_RS14115 0.64 -0.7
2,950,371 - BWI76_RS14115 0.64 -0.3
2,950,372 - BWI76_RS14115 0.65 +1.7
2,950,372 - BWI76_RS14115 0.65 +0.5
2,950,372 - BWI76_RS14115 0.65 +1.2
2,950,372 - BWI76_RS14115 0.65 +1.6
2,950,372 - BWI76_RS14115 0.65 +1.4
2,950,372 - BWI76_RS14115 0.65 +0.7
2,950,372 - BWI76_RS14115 0.65 +0.3
2,950,372 - BWI76_RS14115 0.65 +0.3
2,950,372 - BWI76_RS14115 0.65 -0.8
2,950,372 - BWI76_RS14115 0.65 -1.4
2,950,372 - BWI76_RS14115 0.65 -0.2
2,950,372 - BWI76_RS14115 0.65 -0.4
2,950,372 - BWI76_RS14115 0.65 -0.5
2,950,372 - BWI76_RS14115 0.65 -0.0
2,950,372 - BWI76_RS14115 0.65 -1.0
2,950,372 - BWI76_RS14115 0.65 -0.6
2,950,372 - BWI76_RS14115 0.65 -2.7
2,950,372 - BWI76_RS14115 0.65 -0.5
2,950,372 - BWI76_RS14115 0.65 -0.4
2,950,372 - BWI76_RS14115 0.65 -2.7
2,950,375 - BWI76_RS14115 0.67 -0.8
2,950,382 - BWI76_RS14115 0.71 -1.1
2,950,382 - BWI76_RS14115 0.71 -0.6
2,950,382 - BWI76_RS14115 0.71 +0.1
2,950,382 - BWI76_RS14115 0.71 -0.4
2,950,438 - +0.5
2,950,461 - -0.0
2,950,595 - -0.0
2,950,629 + +3.1
2,950,631 + -0.1
2,950,631 + -3.2
2,950,639 - -0.9
2,950,647 + +2.0
2,950,666 + +0.2
2,950,673 + +0.3
2,950,673 + +0.2
2,950,673 + +0.4
2,950,689 + -0.7
2,950,697 - +0.5
2,950,717 + -0.3
2,950,751 - -0.3
2,950,753 + -4.6
2,950,753 + -0.6
2,950,763 + -0.1
2,950,771 - BWI76_RS14120 0.11 +0.4
2,950,785 + BWI76_RS14120 0.17 +0.5
2,950,800 + BWI76_RS14120 0.23 +0.3
2,950,800 + BWI76_RS14120 0.23 +1.3
2,950,808 - BWI76_RS14120 0.27 +0.1
2,950,808 - BWI76_RS14120 0.27 +2.2
2,950,808 - BWI76_RS14120 0.27 +1.4
2,950,809 + BWI76_RS14120 0.27 +0.7
2,950,809 + BWI76_RS14120 0.27 -0.3
2,950,831 + BWI76_RS14120 0.37 +0.1
2,950,837 + BWI76_RS14120 0.39 -0.4
2,950,837 + BWI76_RS14120 0.39 -0.5
2,950,901 + BWI76_RS14120 0.67 +0.8
2,950,904 + BWI76_RS14120 0.68 +1.2
2,950,909 - BWI76_RS14120 0.71 -1.0
2,951,063 - +0.9
2,951,201 + BWI76_RS14125 0.20 +0.1
2,951,201 + BWI76_RS14125 0.20 +0.9
2,951,366 + BWI76_RS14125 0.38 -2.8
2,951,379 + BWI76_RS14125 0.40 +0.6
2,951,457 - BWI76_RS14125 0.49 -0.2
2,951,515 + BWI76_RS14125 0.55 +0.9
2,951,525 - BWI76_RS14125 0.56 -0.1
2,951,622 + BWI76_RS14125 0.67 -0.3
2,951,624 - BWI76_RS14125 0.67 +1.1
2,951,630 - BWI76_RS14125 0.68 -1.0
2,951,630 - BWI76_RS14125 0.68 +1.6
2,951,630 - BWI76_RS14125 0.68 -0.2
2,951,630 - BWI76_RS14125 0.68 +1.6
2,951,650 + BWI76_RS14125 0.70 -0.4
2,951,687 + BWI76_RS14125 0.75 +0.9
2,951,711 + BWI76_RS14125 0.77 +0.9
2,951,716 - BWI76_RS14125 0.78 -0.1
2,951,796 + BWI76_RS14125 0.87 +0.1
2,951,836 + -1.1
2,951,857 + -2.2
2,951,874 + +0.5
2,951,877 + -1.1
2,951,882 + +0.5
2,951,882 + -0.1
2,951,882 + +2.2
2,951,882 + +0.5
2,951,882 + -0.1
2,951,882 + -0.5
2,951,885 - -2.2
2,951,890 - -2.0
2,951,890 - +1.3

Or see this region's nucleotide sequence