Experiment: KB with Usnic Acid 10 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_4447 and Psyr_4448 are separated by 0 nucleotides Psyr_4448 and Psyr_4449 are separated by 177 nucleotides Psyr_4449 and Psyr_4450 are separated by 223 nucleotides
Psyr_4447: Psyr_4447 - hypothetical protein, at 5,313,031 to 5,313,366
_4447
Psyr_4448: Psyr_4448 - Ferritin and Dps, at 5,313,367 to 5,313,909
_4448
Psyr_4449: Psyr_4449 - AsmA, at 5,314,087 to 5,316,153
_4449
Psyr_4450: Psyr_4450 - transcriptional regulator, TetR family, at 5,316,377 to 5,317,009
_4450
Position (kb) 5314
5315
5316
5317 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 5313.164 kb on + strand, within Psyr_4447 at 5313.164 kb on + strand, within Psyr_4447 at 5313.165 kb on - strand, within Psyr_4447 at 5313.177 kb on + strand, within Psyr_4447 at 5313.225 kb on + strand, within Psyr_4447 at 5313.225 kb on + strand, within Psyr_4447 at 5313.225 kb on + strand, within Psyr_4447 at 5313.226 kb on - strand, within Psyr_4447 at 5313.231 kb on + strand, within Psyr_4447 at 5313.232 kb on - strand, within Psyr_4447 at 5313.232 kb on - strand, within Psyr_4447 at 5313.324 kb on + strand, within Psyr_4447 at 5313.324 kb on + strand, within Psyr_4447 at 5313.324 kb on + strand, within Psyr_4447 at 5313.364 kb on + strand at 5313.364 kb on + strand at 5313.365 kb on - strand at 5313.365 kb on - strand at 5313.365 kb on - strand at 5313.365 kb on - strand at 5313.404 kb on + strand at 5313.404 kb on + strand at 5313.404 kb on + strand at 5313.405 kb on - strand at 5313.405 kb on - strand at 5313.405 kb on - strand at 5313.405 kb on - strand at 5313.408 kb on + strand at 5313.408 kb on + strand at 5313.408 kb on + strand at 5313.408 kb on + strand at 5313.408 kb on + strand at 5313.408 kb on + strand at 5313.409 kb on - strand at 5313.409 kb on - strand at 5313.409 kb on - strand at 5313.409 kb on - strand at 5313.409 kb on - strand at 5313.409 kb on - strand at 5313.463 kb on + strand, within Psyr_4448 at 5313.464 kb on - strand, within Psyr_4448 at 5313.464 kb on - strand, within Psyr_4448 at 5313.539 kb on - strand, within Psyr_4448 at 5313.550 kb on + strand, within Psyr_4448 at 5313.551 kb on - strand, within Psyr_4448 at 5313.551 kb on - strand, within Psyr_4448 at 5313.551 kb on - strand, within Psyr_4448 at 5313.553 kb on + strand, within Psyr_4448 at 5313.553 kb on + strand, within Psyr_4448 at 5313.553 kb on + strand, within Psyr_4448 at 5313.553 kb on + strand, within Psyr_4448 at 5313.553 kb on + strand, within Psyr_4448 at 5313.553 kb on + strand, within Psyr_4448 at 5313.553 kb on + strand, within Psyr_4448 at 5313.553 kb on + strand, within Psyr_4448 at 5313.553 kb on + strand, within Psyr_4448 at 5313.553 kb on + strand, within Psyr_4448 at 5313.553 kb on + strand, within Psyr_4448 at 5313.553 kb on + strand, within Psyr_4448 at 5313.553 kb on + strand, within Psyr_4448 at 5313.553 kb on + strand, within Psyr_4448 at 5313.553 kb on + strand, within Psyr_4448 at 5313.553 kb on + strand, within Psyr_4448 at 5313.553 kb on + strand, within Psyr_4448 at 5313.553 kb on + strand, within Psyr_4448 at 5313.553 kb on + strand, within Psyr_4448 at 5313.553 kb on + strand, within Psyr_4448 at 5313.553 kb on + strand, within Psyr_4448 at 5313.553 kb on + strand, within Psyr_4448 at 5313.553 kb on + strand, within Psyr_4448 at 5313.554 kb on - strand, within Psyr_4448 at 5313.554 kb on - strand, within Psyr_4448 at 5313.554 kb on - strand, within Psyr_4448 at 5313.554 kb on - strand, within Psyr_4448 at 5313.554 kb on - strand, within Psyr_4448 at 5313.554 kb on - strand, within Psyr_4448 at 5313.554 kb on - strand, within Psyr_4448 at 5313.554 kb on - strand, within Psyr_4448 at 5313.554 kb on - strand, within Psyr_4448 at 5313.554 kb on - strand, within Psyr_4448 at 5313.554 kb on - strand, within Psyr_4448 at 5313.554 kb on - strand, within Psyr_4448 at 5313.554 kb on - strand, within Psyr_4448 at 5313.554 kb on - strand, within Psyr_4448 at 5313.554 kb on - strand, within Psyr_4448 at 5313.554 kb on - strand, within Psyr_4448 at 5313.554 kb on - strand, within Psyr_4448 at 5313.554 kb on - strand, within Psyr_4448 at 5313.554 kb on - strand, within Psyr_4448 at 5313.554 kb on - strand, within Psyr_4448 at 5313.554 kb on - strand, within Psyr_4448 at 5313.648 kb on + strand, within Psyr_4448 at 5313.649 kb on - strand, within Psyr_4448 at 5313.715 kb on + strand, within Psyr_4448 at 5313.715 kb on + strand, within Psyr_4448 at 5313.715 kb on + strand, within Psyr_4448 at 5313.715 kb on + strand, within Psyr_4448 at 5313.716 kb on - strand, within Psyr_4448 at 5313.716 kb on - strand, within Psyr_4448 at 5313.716 kb on - strand, within Psyr_4448 at 5313.716 kb on - strand, within Psyr_4448 at 5313.716 kb on - strand, within Psyr_4448 at 5313.716 kb on - strand, within Psyr_4448 at 5313.749 kb on - strand, within Psyr_4448 at 5313.749 kb on - strand, within Psyr_4448 at 5313.805 kb on + strand, within Psyr_4448 at 5313.805 kb on + strand, within Psyr_4448 at 5313.964 kb on + strand at 5313.964 kb on + strand at 5313.964 kb on + strand at 5314.044 kb on + strand at 5314.044 kb on + strand at 5314.045 kb on - strand at 5314.088 kb on + strand at 5314.088 kb on + strand at 5314.088 kb on + strand at 5314.089 kb on - strand at 5314.089 kb on - strand at 5314.201 kb on + strand at 5314.201 kb on + strand at 5314.202 kb on - strand at 5314.202 kb on - strand at 5314.202 kb on - strand at 5314.243 kb on + strand at 5314.295 kb on + strand, within Psyr_4449 at 5314.295 kb on + strand, within Psyr_4449 at 5314.295 kb on + strand, within Psyr_4449 at 5314.295 kb on + strand, within Psyr_4449 at 5314.296 kb on - strand, within Psyr_4449 at 5314.296 kb on - strand, within Psyr_4449 at 5314.296 kb on - strand, within Psyr_4449 at 5314.394 kb on + strand, within Psyr_4449 at 5314.394 kb on + strand, within Psyr_4449 at 5314.394 kb on + strand, within Psyr_4449 at 5314.394 kb on + strand, within Psyr_4449 at 5314.394 kb on + strand, within Psyr_4449 at 5314.394 kb on + strand, within Psyr_4449 at 5314.394 kb on + strand, within Psyr_4449 at 5314.394 kb on + strand, within Psyr_4449 at 5314.394 kb on + strand, within Psyr_4449 at 5314.394 kb on + strand, within Psyr_4449 at 5314.394 kb on + strand, within Psyr_4449 at 5314.395 kb on - strand, within Psyr_4449 at 5314.395 kb on - strand, within Psyr_4449 at 5314.395 kb on - strand, within Psyr_4449 at 5314.395 kb on - strand, within Psyr_4449 at 5314.395 kb on - strand, within Psyr_4449 at 5314.395 kb on - strand, within Psyr_4449 at 5314.395 kb on - strand, within Psyr_4449 at 5314.398 kb on + strand, within Psyr_4449 at 5314.399 kb on - strand, within Psyr_4449 at 5314.399 kb on - strand, within Psyr_4449 at 5314.520 kb on + strand, within Psyr_4449 at 5314.520 kb on + strand, within Psyr_4449 at 5314.521 kb on - strand, within Psyr_4449 at 5314.521 kb on - strand, within Psyr_4449 at 5314.521 kb on - strand, within Psyr_4449 at 5314.521 kb on - strand, within Psyr_4449 at 5314.521 kb on - strand, within Psyr_4449 at 5314.521 kb on - strand, within Psyr_4449 at 5314.521 kb on - strand, within Psyr_4449 at 5314.521 kb on - strand, within Psyr_4449 at 5314.521 kb on - strand, within Psyr_4449 at 5314.521 kb on - strand, within Psyr_4449 at 5314.725 kb on + strand, within Psyr_4449 at 5314.783 kb on - strand, within Psyr_4449 at 5314.829 kb on - strand, within Psyr_4449 at 5314.865 kb on + strand, within Psyr_4449 at 5314.866 kb on - strand, within Psyr_4449 at 5314.866 kb on - strand, within Psyr_4449 at 5315.237 kb on + strand, within Psyr_4449 at 5315.238 kb on - strand, within Psyr_4449 at 5315.238 kb on - strand, within Psyr_4449 at 5315.238 kb on - strand, within Psyr_4449 at 5315.507 kb on + strand, within Psyr_4449 at 5315.508 kb on - strand, within Psyr_4449 at 5315.508 kb on - strand, within Psyr_4449 at 5315.802 kb on + strand, within Psyr_4449 at 5316.091 kb on + strand at 5316.092 kb on - strand at 5316.092 kb on - strand at 5316.092 kb on - strand at 5316.092 kb on - strand at 5316.093 kb on + strand at 5316.093 kb on + strand at 5316.093 kb on + strand at 5316.093 kb on + strand at 5316.093 kb on + strand at 5316.094 kb on - strand at 5316.094 kb on - strand at 5316.094 kb on - strand at 5316.094 kb on - strand at 5316.198 kb on + strand at 5316.209 kb on + strand at 5316.209 kb on + strand at 5316.209 kb on + strand at 5316.280 kb on + strand at 5316.280 kb on + strand at 5316.280 kb on + strand at 5316.281 kb on - strand at 5316.281 kb on - strand at 5316.283 kb on + strand at 5316.283 kb on + strand at 5316.325 kb on - strand at 5316.325 kb on - strand at 5316.339 kb on - strand at 5316.339 kb on - strand at 5316.356 kb on - strand at 5316.356 kb on - strand at 5316.356 kb on - strand at 5316.657 kb on + strand, within Psyr_4450 at 5316.657 kb on + strand, within Psyr_4450 at 5316.657 kb on + strand, within Psyr_4450 at 5316.658 kb on - strand, within Psyr_4450 at 5316.658 kb on - strand, within Psyr_4450 at 5316.658 kb on - strand, within Psyr_4450 at 5316.658 kb on - strand, within Psyr_4450 at 5316.716 kb on + strand, within Psyr_4450 at 5316.717 kb on - strand, within Psyr_4450 at 5317.024 kb on + strand at 5317.025 kb on - strand at 5317.055 kb on - strand at 5317.063 kb on + strand at 5317.064 kb on - strand at 5317.092 kb on + strand at 5317.093 kb on - strand at 5317.119 kb on - strand at 5317.119 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction KB with Usnic Acid 10 mM remove 5,313,164 + Psyr_4447 0.40 -0.8 5,313,164 + Psyr_4447 0.40 +0.1 5,313,165 - Psyr_4447 0.40 +0.2 5,313,177 + Psyr_4447 0.43 -0.7 5,313,225 + Psyr_4447 0.58 -0.8 5,313,225 + Psyr_4447 0.58 +1.2 5,313,225 + Psyr_4447 0.58 -1.2 5,313,226 - Psyr_4447 0.58 +0.7 5,313,231 + Psyr_4447 0.60 -0.9 5,313,232 - Psyr_4447 0.60 +0.9 5,313,232 - Psyr_4447 0.60 -1.8 5,313,324 + Psyr_4447 0.87 +0.7 5,313,324 + Psyr_4447 0.87 +0.7 5,313,324 + Psyr_4447 0.87 +1.8 5,313,364 + -0.1 5,313,364 + +2.1 5,313,365 - +0.5 5,313,365 - +0.7 5,313,365 - +1.7 5,313,365 - +2.6 5,313,404 + -0.3 5,313,404 + +0.4 5,313,404 + -2.5 5,313,405 - +0.6 5,313,405 - +0.5 5,313,405 - +1.2 5,313,405 - -0.9 5,313,408 + +0.5 5,313,408 + +0.8 5,313,408 + -1.0 5,313,408 + +0.5 5,313,408 + +0.8 5,313,408 + +0.0 5,313,409 - +0.1 5,313,409 - -0.1 5,313,409 - +0.8 5,313,409 - +0.7 5,313,409 - +0.0 5,313,409 - -0.9 5,313,463 + Psyr_4448 0.18 +1.5 5,313,464 - Psyr_4448 0.18 -0.1 5,313,464 - Psyr_4448 0.18 +0.2 5,313,539 - Psyr_4448 0.32 +0.5 5,313,550 + Psyr_4448 0.34 -0.2 5,313,551 - Psyr_4448 0.34 -1.6 5,313,551 - Psyr_4448 0.34 -0.3 5,313,551 - Psyr_4448 0.34 -0.6 5,313,553 + Psyr_4448 0.34 -0.9 5,313,553 + Psyr_4448 0.34 -1.8 5,313,553 + Psyr_4448 0.34 -0.7 5,313,553 + Psyr_4448 0.34 -0.0 5,313,553 + Psyr_4448 0.34 -0.3 5,313,553 + Psyr_4448 0.34 +0.0 5,313,553 + Psyr_4448 0.34 +0.8 5,313,553 + Psyr_4448 0.34 -0.3 5,313,553 + Psyr_4448 0.34 -0.4 5,313,553 + Psyr_4448 0.34 +0.7 5,313,553 + Psyr_4448 0.34 -1.9 5,313,553 + Psyr_4448 0.34 +0.3 5,313,553 + Psyr_4448 0.34 +0.6 5,313,553 + Psyr_4448 0.34 +0.7 5,313,553 + Psyr_4448 0.34 -0.3 5,313,553 + Psyr_4448 0.34 +0.3 5,313,553 + Psyr_4448 0.34 -0.7 5,313,553 + Psyr_4448 0.34 -0.2 5,313,553 + Psyr_4448 0.34 +1.8 5,313,553 + Psyr_4448 0.34 -0.5 5,313,553 + Psyr_4448 0.34 +1.2 5,313,553 + Psyr_4448 0.34 +1.6 5,313,553 + Psyr_4448 0.34 +1.0 5,313,554 - Psyr_4448 0.34 -0.8 5,313,554 - Psyr_4448 0.34 -0.3 5,313,554 - Psyr_4448 0.34 +0.2 5,313,554 - Psyr_4448 0.34 +0.4 5,313,554 - Psyr_4448 0.34 +0.6 5,313,554 - Psyr_4448 0.34 -0.7 5,313,554 - Psyr_4448 0.34 +0.9 5,313,554 - Psyr_4448 0.34 +0.1 5,313,554 - Psyr_4448 0.34 +0.8 5,313,554 - Psyr_4448 0.34 -0.8 5,313,554 - Psyr_4448 0.34 +0.2 5,313,554 - Psyr_4448 0.34 -0.5 5,313,554 - Psyr_4448 0.34 -1.8 5,313,554 - Psyr_4448 0.34 -0.2 5,313,554 - Psyr_4448 0.34 -1.7 5,313,554 - Psyr_4448 0.34 -1.3 5,313,554 - Psyr_4448 0.34 -0.6 5,313,554 - Psyr_4448 0.34 +0.4 5,313,554 - Psyr_4448 0.34 +0.3 5,313,554 - Psyr_4448 0.34 +0.3 5,313,554 - Psyr_4448 0.34 -0.7 5,313,648 + Psyr_4448 0.52 +0.7 5,313,649 - Psyr_4448 0.52 +0.4 5,313,715 + Psyr_4448 0.64 -1.8 5,313,715 + Psyr_4448 0.64 +1.6 5,313,715 + Psyr_4448 0.64 +0.7 5,313,715 + Psyr_4448 0.64 -0.3 5,313,716 - Psyr_4448 0.64 -2.2 5,313,716 - Psyr_4448 0.64 -0.1 5,313,716 - Psyr_4448 0.64 -0.3 5,313,716 - Psyr_4448 0.64 +0.8 5,313,716 - Psyr_4448 0.64 -0.2 5,313,716 - Psyr_4448 0.64 -0.1 5,313,749 - Psyr_4448 0.70 -0.3 5,313,749 - Psyr_4448 0.70 +0.0 5,313,805 + Psyr_4448 0.81 +0.5 5,313,805 + Psyr_4448 0.81 -1.1 5,313,964 + +0.2 5,313,964 + +0.0 5,313,964 + +0.4 5,314,044 + +0.2 5,314,044 + -0.3 5,314,045 - -1.2 5,314,088 + +0.8 5,314,088 + +0.2 5,314,088 + +0.3 5,314,089 - +1.0 5,314,089 - -0.5 5,314,201 + -0.9 5,314,201 + -0.1 5,314,202 - -0.4 5,314,202 - -0.8 5,314,202 - -0.1 5,314,243 + +0.8 5,314,295 + Psyr_4449 0.10 +2.0 5,314,295 + Psyr_4449 0.10 +0.1 5,314,295 + Psyr_4449 0.10 -1.2 5,314,295 + Psyr_4449 0.10 -0.2 5,314,296 - Psyr_4449 0.10 -0.3 5,314,296 - Psyr_4449 0.10 -0.3 5,314,296 - Psyr_4449 0.10 -0.4 5,314,394 + Psyr_4449 0.15 -1.1 5,314,394 + Psyr_4449 0.15 +0.3 5,314,394 + Psyr_4449 0.15 +0.9 5,314,394 + Psyr_4449 0.15 +0.3 5,314,394 + Psyr_4449 0.15 -0.1 5,314,394 + Psyr_4449 0.15 +0.0 5,314,394 + Psyr_4449 0.15 +2.1 5,314,394 + Psyr_4449 0.15 +1.0 5,314,394 + Psyr_4449 0.15 -0.0 5,314,394 + Psyr_4449 0.15 -0.2 5,314,394 + Psyr_4449 0.15 -0.6 5,314,395 - Psyr_4449 0.15 -1.6 5,314,395 - Psyr_4449 0.15 +0.5 5,314,395 - Psyr_4449 0.15 -0.5 5,314,395 - Psyr_4449 0.15 +0.5 5,314,395 - Psyr_4449 0.15 +1.2 5,314,395 - Psyr_4449 0.15 +1.0 5,314,395 - Psyr_4449 0.15 -1.4 5,314,398 + Psyr_4449 0.15 -2.3 5,314,399 - Psyr_4449 0.15 +0.2 5,314,399 - Psyr_4449 0.15 +0.3 5,314,520 + Psyr_4449 0.21 +0.6 5,314,520 + Psyr_4449 0.21 +1.8 5,314,521 - Psyr_4449 0.21 +1.0 5,314,521 - Psyr_4449 0.21 -0.2 5,314,521 - Psyr_4449 0.21 -0.5 5,314,521 - Psyr_4449 0.21 +0.1 5,314,521 - Psyr_4449 0.21 +0.2 5,314,521 - Psyr_4449 0.21 +0.5 5,314,521 - Psyr_4449 0.21 +1.1 5,314,521 - Psyr_4449 0.21 +0.2 5,314,521 - Psyr_4449 0.21 +1.2 5,314,521 - Psyr_4449 0.21 -0.2 5,314,725 + Psyr_4449 0.31 +0.9 5,314,783 - Psyr_4449 0.34 -0.7 5,314,829 - Psyr_4449 0.36 +0.4 5,314,865 + Psyr_4449 0.38 +0.5 5,314,866 - Psyr_4449 0.38 +0.9 5,314,866 - Psyr_4449 0.38 -0.1 5,315,237 + Psyr_4449 0.56 -0.3 5,315,238 - Psyr_4449 0.56 -0.2 5,315,238 - Psyr_4449 0.56 +0.6 5,315,238 - Psyr_4449 0.56 +1.6 5,315,507 + Psyr_4449 0.69 +0.8 5,315,508 - Psyr_4449 0.69 +0.4 5,315,508 - Psyr_4449 0.69 -1.6 5,315,802 + Psyr_4449 0.83 -0.6 5,316,091 + +0.7 5,316,092 - +1.0 5,316,092 - -0.7 5,316,092 - -0.4 5,316,092 - +0.0 5,316,093 + +0.3 5,316,093 + +0.2 5,316,093 + -1.3 5,316,093 + +0.8 5,316,093 + -0.6 5,316,094 - -0.1 5,316,094 - -0.5 5,316,094 - -1.2 5,316,094 - +0.2 5,316,198 + +2.2 5,316,209 + +0.2 5,316,209 + -0.4 5,316,209 + -0.1 5,316,280 + -0.4 5,316,280 + -0.6 5,316,280 + +0.8 5,316,281 - -1.1 5,316,281 - +0.6 5,316,283 + +0.1 5,316,283 + -0.6 5,316,325 - -0.4 5,316,325 - -0.8 5,316,339 - +0.3 5,316,339 - -0.5 5,316,356 - -0.1 5,316,356 - +0.8 5,316,356 - +0.8 5,316,657 + Psyr_4450 0.44 +0.7 5,316,657 + Psyr_4450 0.44 +0.1 5,316,657 + Psyr_4450 0.44 -0.5 5,316,658 - Psyr_4450 0.44 +0.8 5,316,658 - Psyr_4450 0.44 -0.2 5,316,658 - Psyr_4450 0.44 -0.1 5,316,658 - Psyr_4450 0.44 +0.0 5,316,716 + Psyr_4450 0.54 +0.0 5,316,717 - Psyr_4450 0.54 +0.9 5,317,024 + -0.7 5,317,025 - -0.8 5,317,055 - -1.3 5,317,063 + -0.4 5,317,064 - +0.2 5,317,092 + -2.8 5,317,093 - -1.6 5,317,119 - +0.1 5,317,119 - -0.0
Or see this region's nucleotide sequence