Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_2865

Experiment: KB with Dihydrodehydroerosone 10 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsyr_2864 and Psyr_2865 overlap by 1 nucleotidesPsyr_2865 and Psyr_2866 are separated by 2 nucleotides Psyr_2864: Psyr_2864 - RND efflux system, outer membrane lipoprotein, NodT, at 3,435,495 to 3,436,901 _2864 Psyr_2865: Psyr_2865 - Hydrophobe/amphiphile efflux-1 HAE1, at 3,436,901 to 3,440,047 _2865 Psyr_2866: Psyr_2866 - Secretion protein HlyD, at 3,440,050 to 3,441,252 _2866 Position (kb) 3436 3437 3438 3439 3440 3441Strain fitness (log2 ratio) -2 -1 0 1 2 3at 3436.007 kb on + strand, within Psyr_2864at 3436.007 kb on + strand, within Psyr_2864at 3436.007 kb on + strand, within Psyr_2864at 3436.008 kb on - strand, within Psyr_2864at 3436.008 kb on - strand, within Psyr_2864at 3436.187 kb on + strand, within Psyr_2864at 3436.187 kb on + strand, within Psyr_2864at 3436.188 kb on - strand, within Psyr_2864at 3436.188 kb on - strand, within Psyr_2864at 3436.429 kb on + strand, within Psyr_2864at 3436.486 kb on + strand, within Psyr_2864at 3436.486 kb on + strand, within Psyr_2864at 3436.487 kb on - strand, within Psyr_2864at 3436.487 kb on - strand, within Psyr_2864at 3436.487 kb on - strand, within Psyr_2864at 3436.487 kb on - strand, within Psyr_2864at 3436.568 kb on + strand, within Psyr_2864at 3436.568 kb on + strand, within Psyr_2864at 3436.832 kb on - strandat 3436.915 kb on + strandat 3436.915 kb on + strandat 3436.915 kb on + strandat 3436.915 kb on + strandat 3436.915 kb on + strandat 3436.916 kb on - strandat 3436.916 kb on - strandat 3436.916 kb on - strandat 3436.916 kb on - strandat 3436.916 kb on - strandat 3437.277 kb on + strand, within Psyr_2865at 3437.278 kb on - strand, within Psyr_2865at 3437.278 kb on - strand, within Psyr_2865at 3437.379 kb on + strand, within Psyr_2865at 3437.379 kb on + strand, within Psyr_2865at 3437.380 kb on - strand, within Psyr_2865at 3437.598 kb on + strand, within Psyr_2865at 3437.622 kb on + strand, within Psyr_2865at 3437.622 kb on + strand, within Psyr_2865at 3437.622 kb on + strand, within Psyr_2865at 3437.623 kb on - strand, within Psyr_2865at 3437.623 kb on - strand, within Psyr_2865at 3437.681 kb on + strand, within Psyr_2865at 3437.682 kb on - strand, within Psyr_2865at 3437.739 kb on + strand, within Psyr_2865at 3437.739 kb on + strand, within Psyr_2865at 3437.739 kb on + strand, within Psyr_2865at 3437.739 kb on + strand, within Psyr_2865at 3437.739 kb on + strand, within Psyr_2865at 3437.740 kb on - strand, within Psyr_2865at 3437.740 kb on - strand, within Psyr_2865at 3437.740 kb on - strand, within Psyr_2865at 3437.740 kb on - strand, within Psyr_2865at 3437.781 kb on + strand, within Psyr_2865at 3437.781 kb on + strand, within Psyr_2865at 3437.781 kb on + strand, within Psyr_2865at 3437.781 kb on + strand, within Psyr_2865at 3437.781 kb on + strand, within Psyr_2865at 3437.781 kb on + strand, within Psyr_2865at 3437.782 kb on - strand, within Psyr_2865at 3438.218 kb on - strand, within Psyr_2865at 3438.218 kb on - strand, within Psyr_2865at 3438.255 kb on + strand, within Psyr_2865at 3438.255 kb on + strand, within Psyr_2865at 3438.255 kb on + strand, within Psyr_2865at 3438.255 kb on + strand, within Psyr_2865at 3438.255 kb on + strand, within Psyr_2865at 3438.255 kb on + strand, within Psyr_2865at 3438.255 kb on + strand, within Psyr_2865at 3438.255 kb on + strand, within Psyr_2865at 3438.255 kb on + strand, within Psyr_2865at 3438.256 kb on - strand, within Psyr_2865at 3438.256 kb on - strand, within Psyr_2865at 3438.256 kb on - strand, within Psyr_2865at 3438.256 kb on - strand, within Psyr_2865at 3438.256 kb on - strand, within Psyr_2865at 3438.256 kb on - strand, within Psyr_2865at 3438.256 kb on - strand, within Psyr_2865at 3438.256 kb on - strand, within Psyr_2865at 3438.286 kb on + strand, within Psyr_2865at 3438.378 kb on + strand, within Psyr_2865at 3438.411 kb on + strand, within Psyr_2865at 3438.411 kb on + strand, within Psyr_2865at 3438.412 kb on - strand, within Psyr_2865at 3438.412 kb on - strand, within Psyr_2865at 3438.412 kb on - strand, within Psyr_2865at 3438.413 kb on + strand, within Psyr_2865at 3438.413 kb on + strand, within Psyr_2865at 3438.413 kb on + strand, within Psyr_2865at 3438.413 kb on + strand, within Psyr_2865at 3438.413 kb on + strand, within Psyr_2865at 3438.413 kb on + strand, within Psyr_2865at 3438.414 kb on - strand, within Psyr_2865at 3438.414 kb on - strand, within Psyr_2865at 3438.647 kb on - strand, within Psyr_2865at 3438.647 kb on - strand, within Psyr_2865at 3439.224 kb on + strand, within Psyr_2865at 3439.492 kb on + strand, within Psyr_2865at 3439.493 kb on - strand, within Psyr_2865at 3439.578 kb on + strand, within Psyr_2865at 3439.579 kb on - strand, within Psyr_2865at 3439.636 kb on + strand, within Psyr_2865at 3439.636 kb on + strand, within Psyr_2865at 3439.818 kb on + strandat 3439.818 kb on + strandat 3439.818 kb on + strandat 3439.818 kb on + strandat 3439.818 kb on + strandat 3439.818 kb on + strandat 3439.818 kb on + strandat 3439.818 kb on + strandat 3439.818 kb on + strandat 3439.818 kb on + strandat 3439.818 kb on + strandat 3439.818 kb on + strandat 3439.818 kb on + strandat 3439.818 kb on + strandat 3439.819 kb on - strandat 3439.819 kb on - strandat 3439.819 kb on - strandat 3439.819 kb on - strandat 3439.819 kb on - strandat 3439.819 kb on - strandat 3439.819 kb on - strandat 3439.819 kb on - strandat 3439.902 kb on + strandat 3439.902 kb on + strandat 3439.903 kb on - strandat 3440.369 kb on + strand, within Psyr_2866at 3440.369 kb on + strand, within Psyr_2866at 3440.369 kb on + strand, within Psyr_2866at 3440.370 kb on - strand, within Psyr_2866at 3440.370 kb on - strand, within Psyr_2866at 3440.370 kb on - strand, within Psyr_2866at 3440.370 kb on - strand, within Psyr_2866at 3440.370 kb on - strand, within Psyr_2866at 3440.370 kb on - strand, within Psyr_2866at 3440.370 kb on - strand, within Psyr_2866at 3440.483 kb on + strand, within Psyr_2866at 3440.483 kb on + strand, within Psyr_2866at 3440.484 kb on - strand, within Psyr_2866at 3440.609 kb on + strand, within Psyr_2866at 3440.945 kb on + strand, within Psyr_2866at 3440.945 kb on + strand, within Psyr_2866at 3440.946 kb on - strand, within Psyr_2866at 3440.967 kb on - strand, within Psyr_2866at 3441.044 kb on - strand, within Psyr_2866

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Per-strain Table

Position Strand Gene LocusTag Fraction KB with Dihydrodehydroerosone 10 mM
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3,436,007 + Psyr_2864 0.36 +0.2
3,436,007 + Psyr_2864 0.36 +1.3
3,436,007 + Psyr_2864 0.36 +0.6
3,436,008 - Psyr_2864 0.36 -0.2
3,436,008 - Psyr_2864 0.36 +1.2
3,436,187 + Psyr_2864 0.49 +0.1
3,436,187 + Psyr_2864 0.49 -0.7
3,436,188 - Psyr_2864 0.49 +0.7
3,436,188 - Psyr_2864 0.49 +1.6
3,436,429 + Psyr_2864 0.66 +0.9
3,436,486 + Psyr_2864 0.70 +0.2
3,436,486 + Psyr_2864 0.70 -1.9
3,436,487 - Psyr_2864 0.71 +1.7
3,436,487 - Psyr_2864 0.71 +0.1
3,436,487 - Psyr_2864 0.71 +0.4
3,436,487 - Psyr_2864 0.71 -0.3
3,436,568 + Psyr_2864 0.76 -1.9
3,436,568 + Psyr_2864 0.76 -1.2
3,436,832 - -1.4
3,436,915 + +1.2
3,436,915 + -0.6
3,436,915 + +0.2
3,436,915 + +0.6
3,436,915 + -0.4
3,436,916 - -0.1
3,436,916 - +0.3
3,436,916 - +0.8
3,436,916 - +0.5
3,436,916 - +0.6
3,437,277 + Psyr_2865 0.12 -0.3
3,437,278 - Psyr_2865 0.12 +1.2
3,437,278 - Psyr_2865 0.12 +0.8
3,437,379 + Psyr_2865 0.15 -0.0
3,437,379 + Psyr_2865 0.15 -1.8
3,437,380 - Psyr_2865 0.15 -0.1
3,437,598 + Psyr_2865 0.22 -0.6
3,437,622 + Psyr_2865 0.23 +0.8
3,437,622 + Psyr_2865 0.23 +0.7
3,437,622 + Psyr_2865 0.23 -0.4
3,437,623 - Psyr_2865 0.23 +0.8
3,437,623 - Psyr_2865 0.23 +0.8
3,437,681 + Psyr_2865 0.25 +0.9
3,437,682 - Psyr_2865 0.25 +0.6
3,437,739 + Psyr_2865 0.27 -0.3
3,437,739 + Psyr_2865 0.27 -1.2
3,437,739 + Psyr_2865 0.27 -2.5
3,437,739 + Psyr_2865 0.27 +0.2
3,437,739 + Psyr_2865 0.27 +1.9
3,437,740 - Psyr_2865 0.27 -0.4
3,437,740 - Psyr_2865 0.27 -0.2
3,437,740 - Psyr_2865 0.27 -0.2
3,437,740 - Psyr_2865 0.27 +0.8
3,437,781 + Psyr_2865 0.28 -1.2
3,437,781 + Psyr_2865 0.28 -2.6
3,437,781 + Psyr_2865 0.28 +1.7
3,437,781 + Psyr_2865 0.28 +0.8
3,437,781 + Psyr_2865 0.28 +1.0
3,437,781 + Psyr_2865 0.28 -0.2
3,437,782 - Psyr_2865 0.28 +0.8
3,438,218 - Psyr_2865 0.42 +0.3
3,438,218 - Psyr_2865 0.42 -0.4
3,438,255 + Psyr_2865 0.43 -0.2
3,438,255 + Psyr_2865 0.43 +0.9
3,438,255 + Psyr_2865 0.43 +0.4
3,438,255 + Psyr_2865 0.43 -2.5
3,438,255 + Psyr_2865 0.43 -0.0
3,438,255 + Psyr_2865 0.43 +1.1
3,438,255 + Psyr_2865 0.43 +0.6
3,438,255 + Psyr_2865 0.43 +0.7
3,438,255 + Psyr_2865 0.43 +0.2
3,438,256 - Psyr_2865 0.43 +0.7
3,438,256 - Psyr_2865 0.43 -0.2
3,438,256 - Psyr_2865 0.43 -1.6
3,438,256 - Psyr_2865 0.43 +0.8
3,438,256 - Psyr_2865 0.43 +0.2
3,438,256 - Psyr_2865 0.43 +0.6
3,438,256 - Psyr_2865 0.43 -1.2
3,438,256 - Psyr_2865 0.43 +1.9
3,438,286 + Psyr_2865 0.44 +0.1
3,438,378 + Psyr_2865 0.47 +0.9
3,438,411 + Psyr_2865 0.48 +0.1
3,438,411 + Psyr_2865 0.48 -0.3
3,438,412 - Psyr_2865 0.48 -0.4
3,438,412 - Psyr_2865 0.48 -0.3
3,438,412 - Psyr_2865 0.48 -1.2
3,438,413 + Psyr_2865 0.48 +0.4
3,438,413 + Psyr_2865 0.48 +1.7
3,438,413 + Psyr_2865 0.48 -0.2
3,438,413 + Psyr_2865 0.48 +0.1
3,438,413 + Psyr_2865 0.48 +0.3
3,438,413 + Psyr_2865 0.48 -0.8
3,438,414 - Psyr_2865 0.48 +0.6
3,438,414 - Psyr_2865 0.48 +3.2
3,438,647 - Psyr_2865 0.55 -0.5
3,438,647 - Psyr_2865 0.55 +0.1
3,439,224 + Psyr_2865 0.74 +2.4
3,439,492 + Psyr_2865 0.82 -0.2
3,439,493 - Psyr_2865 0.82 -0.2
3,439,578 + Psyr_2865 0.85 +1.8
3,439,579 - Psyr_2865 0.85 +0.8
3,439,636 + Psyr_2865 0.87 -0.4
3,439,636 + Psyr_2865 0.87 +0.9
3,439,818 + +1.8
3,439,818 + +1.2
3,439,818 + +0.7
3,439,818 + +0.3
3,439,818 + -1.2
3,439,818 + +0.2
3,439,818 + +2.2
3,439,818 + +1.2
3,439,818 + +0.3
3,439,818 + +1.0
3,439,818 + -0.3
3,439,818 + +0.6
3,439,818 + +0.1
3,439,818 + -0.5
3,439,819 - +0.8
3,439,819 - -1.2
3,439,819 - +0.9
3,439,819 - -1.2
3,439,819 - +0.4
3,439,819 - +2.0
3,439,819 - +0.2
3,439,819 - +1.2
3,439,902 + -0.5
3,439,902 + +1.8
3,439,903 - -1.5
3,440,369 + Psyr_2866 0.27 -0.4
3,440,369 + Psyr_2866 0.27 -0.9
3,440,369 + Psyr_2866 0.27 +0.2
3,440,370 - Psyr_2866 0.27 +0.5
3,440,370 - Psyr_2866 0.27 +0.3
3,440,370 - Psyr_2866 0.27 +0.1
3,440,370 - Psyr_2866 0.27 +1.7
3,440,370 - Psyr_2866 0.27 -1.5
3,440,370 - Psyr_2866 0.27 -0.1
3,440,370 - Psyr_2866 0.27 -0.1
3,440,483 + Psyr_2866 0.36 +1.0
3,440,483 + Psyr_2866 0.36 +1.0
3,440,484 - Psyr_2866 0.36 -0.3
3,440,609 + Psyr_2866 0.46 +1.4
3,440,945 + Psyr_2866 0.74 +0.5
3,440,945 + Psyr_2866 0.74 -0.2
3,440,946 - Psyr_2866 0.74 +1.4
3,440,967 - Psyr_2866 0.76 +0.5
3,441,044 - Psyr_2866 0.83 -0.0

Or see this region's nucleotide sequence