Experiment: carbon source Sucrose 1mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf1N1B4_836 and Pf1N1B4_837 are separated by 237 nucleotides Pf1N1B4_837 and Pf1N1B4_838 are separated by 101 nucleotides
Pf1N1B4_836 - PTS system, trehalose-specific IIB component (EC 2.7.1.69) / PTS system, trehalose-specific IIC component (EC 2.7.1.69), at 959,032 to 960,474
_836
Pf1N1B4_837 - Trehalose operon transcriptional repressor, at 960,712 to 961,416
_837
Pf1N1B4_838 - hypothetical protein, at 961,518 to 966,230
_838
Position (kb) 960
961
962 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4
5 at 959.729 kb on + strand, within Pf1N1B4_836 at 959.729 kb on + strand, within Pf1N1B4_836 at 959.730 kb on - strand, within Pf1N1B4_836 at 959.850 kb on - strand, within Pf1N1B4_836 at 960.024 kb on - strand, within Pf1N1B4_836 at 960.248 kb on + strand, within Pf1N1B4_836 at 960.248 kb on + strand, within Pf1N1B4_836 at 960.281 kb on - strand, within Pf1N1B4_836 at 960.281 kb on - strand, within Pf1N1B4_836 at 960.281 kb on - strand, within Pf1N1B4_836 at 960.302 kb on + strand, within Pf1N1B4_836 at 960.302 kb on + strand, within Pf1N1B4_836 at 960.302 kb on + strand, within Pf1N1B4_836 at 960.302 kb on + strand, within Pf1N1B4_836 at 960.302 kb on + strand, within Pf1N1B4_836 at 960.303 kb on - strand, within Pf1N1B4_836 at 960.303 kb on - strand, within Pf1N1B4_836 at 960.303 kb on - strand, within Pf1N1B4_836 at 960.303 kb on - strand, within Pf1N1B4_836 at 960.303 kb on - strand, within Pf1N1B4_836 at 960.478 kb on + strand at 960.478 kb on + strand at 960.478 kb on + strand at 960.479 kb on - strand at 960.479 kb on - strand at 960.479 kb on - strand at 960.491 kb on + strand at 960.539 kb on - strand at 960.546 kb on - strand at 960.613 kb on + strand at 960.635 kb on + strand at 960.635 kb on + strand at 960.636 kb on - strand at 960.717 kb on + strand at 960.717 kb on + strand at 960.717 kb on + strand at 960.717 kb on + strand at 960.717 kb on + strand at 960.717 kb on + strand at 960.717 kb on + strand at 960.718 kb on - strand at 960.721 kb on + strand at 960.721 kb on + strand at 960.721 kb on + strand at 960.721 kb on + strand at 960.721 kb on + strand at 960.721 kb on + strand at 960.722 kb on - strand at 960.722 kb on - strand at 960.722 kb on - strand at 960.722 kb on - strand at 960.722 kb on - strand at 960.722 kb on - strand at 960.722 kb on - strand at 960.722 kb on - strand at 960.722 kb on - strand at 960.722 kb on - strand at 960.722 kb on - strand at 960.722 kb on - strand at 960.722 kb on - strand at 960.733 kb on + strand at 960.733 kb on + strand at 960.733 kb on + strand at 960.734 kb on - strand at 960.734 kb on - strand at 960.734 kb on - strand at 960.817 kb on + strand, within Pf1N1B4_837 at 960.817 kb on + strand, within Pf1N1B4_837 at 960.968 kb on - strand, within Pf1N1B4_837 at 961.190 kb on - strand at 961.190 kb on - strand, within Pf1N1B4_837 at 961.358 kb on - strand at 961.374 kb on + strand at 961.375 kb on - strand at 961.383 kb on + strand at 961.384 kb on - strand at 961.390 kb on + strand at 961.390 kb on + strand at 961.420 kb on + strand at 961.447 kb on + strand at 961.447 kb on + strand at 961.447 kb on + strand at 961.447 kb on + strand at 961.447 kb on + strand at 961.447 kb on + strand at 961.447 kb on + strand at 961.448 kb on - strand at 961.448 kb on - strand at 961.448 kb on - strand at 961.448 kb on - strand at 961.448 kb on - strand at 961.448 kb on - strand at 961.448 kb on - strand at 961.448 kb on - strand at 961.448 kb on - strand at 961.448 kb on - strand at 961.448 kb on - strand at 961.448 kb on - strand at 961.448 kb on - strand at 961.451 kb on + strand at 961.451 kb on + strand at 961.451 kb on + strand at 961.451 kb on + strand at 961.451 kb on + strand at 961.451 kb on + strand at 961.451 kb on + strand at 961.451 kb on + strand at 961.451 kb on + strand at 961.451 kb on + strand at 961.451 kb on + strand at 961.451 kb on + strand at 961.451 kb on + strand at 961.451 kb on + strand at 961.451 kb on + strand at 961.451 kb on + strand at 961.451 kb on + strand at 961.451 kb on + strand at 961.451 kb on + strand at 961.451 kb on + strand at 961.451 kb on + strand at 961.452 kb on - strand at 961.452 kb on - strand at 961.452 kb on - strand at 961.452 kb on - strand at 961.452 kb on - strand at 961.452 kb on - strand at 961.452 kb on - strand at 961.452 kb on - strand at 961.452 kb on - strand at 961.452 kb on - strand at 961.452 kb on - strand at 961.452 kb on - strand at 961.452 kb on - strand at 961.452 kb on - strand at 961.452 kb on - strand at 961.452 kb on - strand at 961.452 kb on - strand at 961.452 kb on - strand at 961.452 kb on - strand at 961.452 kb on - strand at 961.452 kb on - strand at 961.452 kb on - strand at 961.452 kb on - strand at 961.452 kb on - strand at 961.452 kb on - strand at 961.452 kb on - strand at 961.452 kb on - strand at 961.452 kb on - strand at 961.452 kb on - strand at 961.452 kb on - strand at 961.452 kb on - strand at 961.452 kb on - strand at 961.452 kb on - strand at 961.452 kb on - strand at 961.452 kb on - strand at 961.452 kb on - strand at 961.452 kb on - strand at 961.452 kb on - strand at 961.452 kb on - strand at 961.452 kb on - strand at 961.452 kb on - strand at 961.452 kb on - strand at 961.452 kb on - strand at 961.452 kb on - strand at 961.452 kb on - strand at 961.452 kb on - strand at 961.452 kb on - strand at 961.452 kb on - strand at 961.455 kb on + strand at 961.455 kb on + strand at 961.456 kb on - strand at 961.456 kb on - strand at 961.456 kb on - strand at 961.456 kb on - strand at 961.456 kb on - strand at 961.456 kb on - strand at 961.508 kb on + strand at 961.689 kb on + strand at 961.689 kb on + strand at 961.689 kb on + strand at 961.689 kb on + strand at 961.690 kb on - strand at 961.690 kb on - strand at 961.690 kb on - strand at 961.690 kb on - strand at 961.724 kb on + strand at 961.724 kb on + strand at 961.725 kb on - strand at 961.725 kb on - strand at 961.846 kb on - strand at 961.858 kb on - strand at 961.858 kb on - strand at 961.932 kb on + strand at 961.932 kb on + strand at 961.933 kb on - strand at 961.933 kb on - strand at 961.963 kb on - strand at 962.199 kb on + strand at 962.254 kb on - strand, within Pf1N1B4_838 at 962.254 kb on - strand, within Pf1N1B4_838 at 962.310 kb on + strand, within Pf1N1B4_838
Per-strain Table
Position Strand Gene LocusTag Fraction carbon source Sucrose 1mM remove 959,729 + Pf1N1B4_836 0.48 -2.5 959,729 + Pf1N1B4_836 0.48 +1.2 959,730 - Pf1N1B4_836 0.48 -0.9 959,850 - Pf1N1B4_836 0.57 +2.0 960,024 - Pf1N1B4_836 0.69 +1.0 960,248 + Pf1N1B4_836 0.84 -1.9 960,248 + Pf1N1B4_836 0.84 -0.0 960,281 - Pf1N1B4_836 0.87 -1.4 960,281 - Pf1N1B4_836 0.87 -0.4 960,281 - Pf1N1B4_836 0.87 -0.2 960,302 + Pf1N1B4_836 0.88 +1.0 960,302 + Pf1N1B4_836 0.88 -0.2 960,302 + Pf1N1B4_836 0.88 -0.4 960,302 + Pf1N1B4_836 0.88 -2.6 960,302 + Pf1N1B4_836 0.88 -0.2 960,303 - Pf1N1B4_836 0.88 +2.9 960,303 - Pf1N1B4_836 0.88 +0.7 960,303 - Pf1N1B4_836 0.88 -0.4 960,303 - Pf1N1B4_836 0.88 +0.7 960,303 - Pf1N1B4_836 0.88 -0.3 960,478 + -0.0 960,478 + +0.6 960,478 + -2.2 960,479 - -1.1 960,479 - +2.6 960,479 - -0.2 960,491 + +0.9 960,539 - +1.3 960,546 - +2.4 960,613 + -0.9 960,635 + -0.3 960,635 + -1.7 960,636 - -2.4 960,717 + +1.6 960,717 + +2.2 960,717 + +0.5 960,717 + -1.3 960,717 + -0.6 960,717 + +2.9 960,717 + -1.3 960,718 - +0.1 960,721 + +1.4 960,721 + -1.3 960,721 + -0.6 960,721 + -0.1 960,721 + -0.4 960,721 + +1.3 960,722 - -1.1 960,722 - -1.2 960,722 - +0.1 960,722 - +0.2 960,722 - -1.0 960,722 - -1.6 960,722 - -0.8 960,722 - -1.6 960,722 - +2.0 960,722 - -1.5 960,722 - +1.4 960,722 - +0.6 960,722 - -0.2 960,733 + +0.9 960,733 + -1.7 960,733 + +1.0 960,734 - +2.4 960,734 - -2.1 960,734 - -0.7 960,817 + Pf1N1B4_837 0.15 +1.5 960,817 + Pf1N1B4_837 0.15 -1.7 960,968 - Pf1N1B4_837 0.36 -2.0 961,190 - +1.0 961,190 - Pf1N1B4_837 0.68 +2.1 961,358 - +1.8 961,374 + -1.6 961,375 - +1.5 961,383 + -1.6 961,384 - +1.0 961,390 + +1.7 961,390 + -1.4 961,420 + -2.7 961,447 + +0.3 961,447 + -0.8 961,447 + -0.9 961,447 + -1.3 961,447 + +0.9 961,447 + +0.9 961,447 + -1.5 961,448 - +0.9 961,448 - +0.6 961,448 - +2.0 961,448 - -1.3 961,448 - -1.2 961,448 - +0.4 961,448 - -1.5 961,448 - -1.2 961,448 - -0.8 961,448 - +0.5 961,448 - -1.4 961,448 - -2.2 961,448 - -1.3 961,451 + +1.6 961,451 + +1.3 961,451 + -0.6 961,451 + +1.1 961,451 + +0.2 961,451 + -0.4 961,451 + -1.2 961,451 + -1.3 961,451 + +1.6 961,451 + -0.0 961,451 + -1.3 961,451 + -1.7 961,451 + -1.3 961,451 + -1.1 961,451 + -2.2 961,451 + -2.0 961,451 + +0.6 961,451 + +0.5 961,451 + +0.8 961,451 + -2.0 961,451 + -3.1 961,452 - -0.9 961,452 - -0.4 961,452 - +2.6 961,452 - +0.3 961,452 - -0.4 961,452 - +1.4 961,452 - -1.3 961,452 - -1.8 961,452 - +1.0 961,452 - -1.3 961,452 - -0.4 961,452 - -2.3 961,452 - -1.9 961,452 - -1.9 961,452 - -1.8 961,452 - -1.0 961,452 - +0.1 961,452 - +0.9 961,452 - +0.3 961,452 - -3.0 961,452 - -1.4 961,452 - +1.0 961,452 - +2.4 961,452 - -0.0 961,452 - -0.1 961,452 - -0.9 961,452 - -1.0 961,452 - +0.6 961,452 - -0.0 961,452 - +1.0 961,452 - -0.4 961,452 - -1.7 961,452 - -0.4 961,452 - -0.2 961,452 - +1.3 961,452 - +3.3 961,452 - +0.1 961,452 - -0.1 961,452 - +1.0 961,452 - -0.0 961,452 - +0.6 961,452 - -0.7 961,452 - +1.1 961,452 - -1.1 961,452 - -0.1 961,452 - -0.0 961,452 - -0.3 961,452 - +2.4 961,455 + -0.4 961,455 + +0.3 961,456 - +1.5 961,456 - -1.1 961,456 - -1.6 961,456 - -2.5 961,456 - -0.4 961,456 - -0.0 961,508 + +4.8 961,689 + -0.0 961,689 + -1.2 961,689 + +1.4 961,689 + -1.4 961,690 - -0.0 961,690 - -0.2 961,690 - +1.3 961,690 - +1.2 961,724 + -1.9 961,724 + -0.0 961,725 - +0.9 961,725 - -3.2 961,846 - -1.3 961,858 - +0.1 961,858 - +2.3 961,932 + +1.7 961,932 + +0.7 961,933 - -1.3 961,933 - +0.6 961,963 - +1.5 962,199 + -0.2 962,254 - Pf1N1B4_838 0.16 -1.4 962,254 - Pf1N1B4_838 0.16 -1.9 962,310 + Pf1N1B4_838 0.17 +2.3
Or see this region's nucleotide sequence