Experiment: water survival rep C; Treatment=watercosm; Collection=outgrowth_in_CPG; Time=180_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RALBFv3_RS08575 and RALBFv3_RS08580 are separated by 34 nucleotides RALBFv3_RS08580 and RALBFv3_RS08585 are separated by 140 nucleotides RALBFv3_RS08585 and RALBFv3_RS08590 are separated by 83 nucleotides
RALBFv3_RS08575: RALBFv3_RS08575 - glyoxylate carboligase, at 1,885,073 to 1,886,848
_RS08575
RALBFv3_RS08580: RALBFv3_RS08580 - hydroxypyruvate isomerase, at 1,886,883 to 1,887,665
_RS08580
RALBFv3_RS08585: RALBFv3_RS08585 - 2-hydroxy-3-oxopropionate reductase, at 1,887,806 to 1,888,717
_RS08585
RALBFv3_RS08590: RALBFv3_RS08590 - glycerate kinase, at 1,888,801 to 1,890,105
_RS08590
Position (kb) 1887
1888
1889 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 1886.994 kb on + strand, within RALBFv3_RS08580 at 1887.342 kb on + strand, within RALBFv3_RS08580 at 1887.411 kb on + strand, within RALBFv3_RS08580 at 1887.412 kb on - strand, within RALBFv3_RS08580 at 1887.420 kb on + strand, within RALBFv3_RS08580 at 1887.420 kb on + strand, within RALBFv3_RS08580 at 1887.420 kb on + strand, within RALBFv3_RS08580 at 1887.420 kb on + strand, within RALBFv3_RS08580 at 1887.420 kb on + strand, within RALBFv3_RS08580 at 1887.420 kb on + strand, within RALBFv3_RS08580 at 1887.421 kb on - strand, within RALBFv3_RS08580 at 1887.421 kb on - strand, within RALBFv3_RS08580 at 1887.421 kb on - strand, within RALBFv3_RS08580 at 1887.421 kb on - strand, within RALBFv3_RS08580 at 1887.455 kb on + strand, within RALBFv3_RS08580 at 1887.603 kb on + strand at 1887.603 kb on + strand at 1887.603 kb on + strand at 1887.603 kb on + strand at 1887.604 kb on - strand at 1888.178 kb on + strand, within RALBFv3_RS08585 at 1888.179 kb on - strand, within RALBFv3_RS08585 at 1888.179 kb on - strand, within RALBFv3_RS08585 at 1888.807 kb on - strand at 1889.042 kb on - strand, within RALBFv3_RS08590 at 1889.489 kb on - strand, within RALBFv3_RS08590 at 1889.489 kb on - strand, within RALBFv3_RS08590 at 1889.489 kb on - strand, within RALBFv3_RS08590 at 1889.489 kb on - strand, within RALBFv3_RS08590 at 1889.502 kb on - strand, within RALBFv3_RS08590
Per-strain Table
Position Strand Gene LocusTag Fraction water survival rep C; Treatment=watercosm; Collection=outgrowth_in_CPG; Time=180_days remove 1,886,994 + RALBFv3_RS08580 0.14 -1.1 1,887,342 + RALBFv3_RS08580 0.59 -0.7 1,887,411 + RALBFv3_RS08580 0.67 -0.3 1,887,412 - RALBFv3_RS08580 0.68 -0.5 1,887,420 + RALBFv3_RS08580 0.69 +1.0 1,887,420 + RALBFv3_RS08580 0.69 -0.9 1,887,420 + RALBFv3_RS08580 0.69 -0.6 1,887,420 + RALBFv3_RS08580 0.69 -2.8 1,887,420 + RALBFv3_RS08580 0.69 +0.4 1,887,420 + RALBFv3_RS08580 0.69 -1.0 1,887,421 - RALBFv3_RS08580 0.69 -1.6 1,887,421 - RALBFv3_RS08580 0.69 +0.1 1,887,421 - RALBFv3_RS08580 0.69 -0.1 1,887,421 - RALBFv3_RS08580 0.69 +0.4 1,887,455 + RALBFv3_RS08580 0.73 +0.3 1,887,603 + -0.5 1,887,603 + +3.2 1,887,603 + +0.7 1,887,603 + -0.1 1,887,604 - +1.4 1,888,178 + RALBFv3_RS08585 0.41 -1.1 1,888,179 - RALBFv3_RS08585 0.41 -0.5 1,888,179 - RALBFv3_RS08585 0.41 +0.9 1,888,807 - +0.2 1,889,042 - RALBFv3_RS08590 0.18 +0.5 1,889,489 - RALBFv3_RS08590 0.53 -0.5 1,889,489 - RALBFv3_RS08590 0.53 +0.0 1,889,489 - RALBFv3_RS08590 0.53 -1.9 1,889,489 - RALBFv3_RS08590 0.53 +0.9 1,889,502 - RALBFv3_RS08590 0.54 -0.9
Or see this region's nucleotide sequence