Experiment: nitrogen source nitrite 0.1mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf1N1B4_5291 and Pf1N1B4_5292 are separated by 986 nucleotides
Pf1N1B4_5291 - Putative reductase, at 44,935 to 46,248
_5291
Pf1N1B4_5292 - hypothetical protein, at 47,235 to 47,396
_5292
Position (kb) 47
48 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 46.256 kb on - strand at 46.256 kb on - strand at 46.325 kb on + strand at 46.326 kb on - strand at 46.389 kb on - strand at 46.421 kb on + strand at 46.422 kb on - strand at 46.532 kb on - strand at 46.542 kb on + strand at 46.574 kb on - strand at 46.574 kb on - strand at 46.786 kb on + strand at 46.786 kb on + strand at 46.786 kb on + strand at 46.786 kb on + strand at 46.786 kb on + strand at 46.787 kb on - strand at 46.787 kb on - strand at 46.787 kb on - strand at 46.844 kb on + strand at 46.844 kb on + strand at 46.845 kb on - strand at 46.927 kb on + strand at 47.002 kb on + strand at 47.002 kb on + strand at 47.002 kb on + strand at 47.018 kb on + strand at 47.019 kb on - strand at 47.032 kb on + strand at 47.032 kb on + strand at 47.032 kb on + strand at 47.033 kb on - strand at 47.066 kb on + strand at 47.204 kb on + strand at 47.355 kb on + strand, within Pf1N1B4_5292 at 47.355 kb on + strand, within Pf1N1B4_5292 at 47.355 kb on + strand, within Pf1N1B4_5292 at 47.356 kb on - strand, within Pf1N1B4_5292 at 47.466 kb on + strand at 47.467 kb on - strand at 47.568 kb on + strand at 47.569 kb on - strand at 47.620 kb on + strand at 47.620 kb on + strand at 47.620 kb on + strand at 47.620 kb on + strand at 47.620 kb on + strand at 47.637 kb on + strand at 47.639 kb on + strand at 47.639 kb on + strand at 47.670 kb on + strand at 47.670 kb on + strand at 47.670 kb on + strand at 47.670 kb on + strand at 47.670 kb on + strand at 47.670 kb on + strand at 47.670 kb on + strand at 47.670 kb on + strand at 47.670 kb on + strand at 48.013 kb on + strand at 48.013 kb on + strand at 48.013 kb on + strand at 48.013 kb on + strand at 48.013 kb on + strand at 48.013 kb on + strand at 48.013 kb on + strand at 48.021 kb on + strand at 48.021 kb on + strand at 48.048 kb on + strand at 48.049 kb on - strand at 48.049 kb on - strand at 48.057 kb on + strand at 48.108 kb on + strand at 48.108 kb on + strand at 48.108 kb on + strand at 48.355 kb on + strand at 48.369 kb on + strand at 48.369 kb on + strand at 48.369 kb on + strand at 48.369 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction nitrogen source nitrite 0.1mM remove 46,256 - -0.2 46,256 - +0.5 46,325 + -0.3 46,326 - +0.2 46,389 - +0.1 46,421 + +0.9 46,422 - +0.2 46,532 - +3.7 46,542 + +0.9 46,574 - +0.5 46,574 - +0.9 46,786 + +2.9 46,786 + +0.0 46,786 + -1.5 46,786 + -0.6 46,786 + -0.7 46,787 - -1.8 46,787 - -1.3 46,787 - +0.8 46,844 + -0.2 46,844 + -0.4 46,845 - -1.8 46,927 + +0.1 47,002 + +0.9 47,002 + -1.3 47,002 + +0.1 47,018 + -0.4 47,019 - -0.0 47,032 + +0.6 47,032 + +0.7 47,032 + +0.3 47,033 - -0.4 47,066 + -1.2 47,204 + +0.5 47,355 + Pf1N1B4_5292 0.74 -3.6 47,355 + Pf1N1B4_5292 0.74 +0.7 47,355 + Pf1N1B4_5292 0.74 -1.9 47,356 - Pf1N1B4_5292 0.75 -3.2 47,466 + -2.7 47,467 - -0.0 47,568 + -0.4 47,569 - +0.3 47,620 + +0.8 47,620 + -0.7 47,620 + +2.5 47,620 + +0.8 47,620 + +0.9 47,637 + -0.7 47,639 + +0.6 47,639 + -0.8 47,670 + +0.2 47,670 + +0.5 47,670 + -0.4 47,670 + +0.5 47,670 + -0.5 47,670 + -0.2 47,670 + +1.9 47,670 + -0.8 47,670 + -0.6 48,013 + +0.8 48,013 + -0.9 48,013 + -1.4 48,013 + -0.4 48,013 + -0.0 48,013 + -1.6 48,013 + -0.6 48,021 + -0.2 48,021 + +1.4 48,048 + +0.8 48,049 - +1.3 48,049 - +0.6 48,057 + -2.2 48,108 + +1.0 48,108 + +1.0 48,108 + +0.1 48,355 + -0.5 48,369 + -2.6 48,369 + +1.2 48,369 + -1.0 48,369 + +0.9
Or see this region's nucleotide sequence