Experiment: MoLS4 with S-adenosyl Homocysteine 50uM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DVU2387 and tolQ-1 are separated by 3 nucleotides tolQ-1 and tolR overlap by 17 nucleotides tolR and DVU2390 overlap by 4 nucleotides
DVU2387: DVU2387 - ABC transporter, ATP-binding protein (TIGR), at 2,489,184 to 2,490,962
DVU2387
DVU2388: tolQ-1 - tolQ protein (TIGR), at 2,490,966 to 2,491,919
tolQ-1
DVU2389: tolR - biopolymer transport protein, ExbD/TolR family (TIGR), at 2,491,903 to 2,492,316
tolR
DVU2390: DVU2390 - TonB domain protein (TIGR), at 2,492,313 to 2,493,221
DVU2390
Position (kb)
2491
2492
2493 Strain fitness (log2 ratio)
-2
-1
0
1
2
3 at 2490.999 kb on + strand at 2491.052 kb on + strand at 2491.106 kb on - strand, within tolQ-1 at 2491.118 kb on - strand, within tolQ-1 at 2491.118 kb on - strand, within tolQ-1 at 2491.118 kb on - strand, within tolQ-1 at 2491.120 kb on + strand, within tolQ-1 at 2491.181 kb on - strand, within tolQ-1 at 2491.199 kb on + strand, within tolQ-1 at 2491.279 kb on - strand, within tolQ-1 at 2491.373 kb on + strand, within tolQ-1 at 2491.373 kb on + strand, within tolQ-1 at 2491.383 kb on + strand, within tolQ-1 at 2491.383 kb on + strand, within tolQ-1 at 2491.421 kb on + strand, within tolQ-1 at 2491.429 kb on - strand, within tolQ-1 at 2491.429 kb on - strand, within tolQ-1 at 2491.532 kb on - strand, within tolQ-1 at 2491.578 kb on - strand, within tolQ-1 at 2491.905 kb on - strand at 2491.969 kb on + strand, within tolR at 2492.162 kb on + strand, within tolR at 2492.163 kb on + strand, within tolR at 2492.291 kb on - strand at 2492.312 kb on + strand at 2492.374 kb on + strand at 2492.374 kb on + strand at 2492.445 kb on - strand, within DVU2390 at 2492.450 kb on + strand, within DVU2390 at 2492.486 kb on + strand, within DVU2390 at 2492.494 kb on - strand, within DVU2390 at 2492.494 kb on - strand, within DVU2390 at 2492.552 kb on + strand, within DVU2390 at 2492.604 kb on - strand, within DVU2390 at 2492.636 kb on + strand, within DVU2390 at 2492.674 kb on - strand, within DVU2390 at 2492.693 kb on + strand, within DVU2390 at 2492.770 kb on + strand, within DVU2390 at 2492.819 kb on - strand, within DVU2390 at 2492.913 kb on + strand, within DVU2390 at 2492.934 kb on + strand, within DVU2390 at 2492.940 kb on + strand, within DVU2390 at 2492.950 kb on + strand, within DVU2390 at 2492.958 kb on - strand, within DVU2390 at 2493.003 kb on + strand, within DVU2390 at 2493.074 kb on - strand, within DVU2390
Per-strain Table
Position Strand Gene LocusTag Fraction MoLS4 with S-adenosyl Homocysteine 50uM remove 2,490,999 + +0.1 2,491,052 + -0.0 2,491,106 - tolQ-1 DVU2388 0.15 -0.2 2,491,118 - tolQ-1 DVU2388 0.16 +1.7 2,491,118 - tolQ-1 DVU2388 0.16 -2.3 2,491,118 - tolQ-1 DVU2388 0.16 -0.2 2,491,120 + tolQ-1 DVU2388 0.16 +0.5 2,491,181 - tolQ-1 DVU2388 0.23 -0.8 2,491,199 + tolQ-1 DVU2388 0.24 -0.7 2,491,279 - tolQ-1 DVU2388 0.33 -1.3 2,491,373 + tolQ-1 DVU2388 0.43 -1.8 2,491,373 + tolQ-1 DVU2388 0.43 -0.2 2,491,383 + tolQ-1 DVU2388 0.44 -2.4 2,491,383 + tolQ-1 DVU2388 0.44 +1.1 2,491,421 + tolQ-1 DVU2388 0.48 -0.8 2,491,429 - tolQ-1 DVU2388 0.49 -1.1 2,491,429 - tolQ-1 DVU2388 0.49 -0.1 2,491,532 - tolQ-1 DVU2388 0.59 +0.2 2,491,578 - tolQ-1 DVU2388 0.64 +2.9 2,491,905 - -0.0 2,491,969 + tolR DVU2389 0.16 -0.3 2,492,162 + tolR DVU2389 0.63 -1.8 2,492,163 + tolR DVU2389 0.63 -0.0 2,492,291 - -0.1 2,492,312 + -1.2 2,492,374 + -0.0 2,492,374 + -0.7 2,492,445 - DVU2390 0.15 +0.2 2,492,450 + DVU2390 0.15 +0.1 2,492,486 + DVU2390 0.19 -0.6 2,492,494 - DVU2390 0.20 -0.1 2,492,494 - DVU2390 0.20 +0.1 2,492,552 + DVU2390 0.26 -1.4 2,492,604 - DVU2390 0.32 +0.0 2,492,636 + DVU2390 0.36 +0.2 2,492,674 - DVU2390 0.40 +1.1 2,492,693 + DVU2390 0.42 +0.0 2,492,770 + DVU2390 0.50 -0.3 2,492,819 - DVU2390 0.56 +0.2 2,492,913 + DVU2390 0.66 +0.3 2,492,934 + DVU2390 0.68 -0.3 2,492,940 + DVU2390 0.69 -0.2 2,492,950 + DVU2390 0.70 +0.9 2,492,958 - DVU2390 0.71 -1.0 2,493,003 + DVU2390 0.76 -2.5 2,493,074 - DVU2390 0.84 +0.4
Or see this region's nucleotide sequence