Strain Fitness in Pseudomonas fluorescens FW300-N2E3 around AO353_21980

Experiment: Nitrate reduction, replicate C

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Nitrate reduction, replicate C
4,814,486	+				+1.1
4,814,486	+				+0.9
4,814,502	+				+0.9
4,814,502	+				-0.0
4,814,503	-				+0.2
4,814,583	+				-0.7
4,814,583	+				-0.7
4,814,584	-				+0.3
4,814,664	+				-2.7
4,814,664	+				-1.5
4,814,665	-				+0.9
4,814,665	-				-0.5
4,814,679	-				-1.1
4,814,802	+		AO353_21975	0.22	+0.3
4,814,827	+		AO353_21975	0.25	+0.7
4,814,827	+		AO353_21975	0.25	-2.4
4,814,827	+		AO353_21975	0.25	-1.6
4,814,828	-		AO353_21975	0.26	-0.7
4,814,828	-		AO353_21975	0.26	-1.7
4,814,828	-		AO353_21975	0.26	-1.8
4,814,921	+		AO353_21975	0.37	-0.1
4,814,921	+		AO353_21975	0.37	-0.7
4,814,921	+		AO353_21975	0.37	-0.9
4,814,922	-		AO353_21975	0.37	-2.4
4,814,922	-		AO353_21975	0.37	-1.0
4,814,929	-		AO353_21975	0.38	-1.3
4,815,066	+		AO353_21975	0.55	+0.9
4,815,066	+		AO353_21975	0.55	+0.9
4,815,066	+		AO353_21975	0.55	+1.9
4,815,066	+		AO353_21975	0.55	-0.9
4,815,066	+		AO353_21975	0.55	-1.3
4,815,066	+		AO353_21975	0.55	+0.9
4,815,067	-		AO353_21975	0.55	+0.1
4,815,067	-		AO353_21975	0.55	-1.0
4,815,067	-		AO353_21975	0.55	-0.7
4,815,580	+		AO353_21980	0.29	-1.1
4,815,580	+		AO353_21980	0.29	-2.4
4,815,580	+		AO353_21980	0.29	-1.8
4,815,581	-		AO353_21980	0.29	+1.3
4,815,581	-		AO353_21980	0.29	-1.4
4,815,581	-		AO353_21980	0.29	-0.7
4,815,581	-		AO353_21980	0.29	-1.3
4,815,581	-		AO353_21980	0.29	-1.6
4,815,721	+		AO353_21980	0.53	+0.5
4,815,721	+		AO353_21980	0.53	-1.1
4,815,721	+		AO353_21980	0.53	-2.6
4,815,721	+		AO353_21980	0.53	-1.5
4,815,722	-		AO353_21980	0.53	-0.0
4,815,722	-		AO353_21980	0.53	-0.7
4,815,722	-		AO353_21980	0.53	-0.1
4,815,739	-				+1.9
4,815,745	+		AO353_21980	0.57	-3.0
4,815,746	-		AO353_21980	0.57	-2.2
4,815,802	+		AO353_21980	0.67	+1.4
4,815,802	+		AO353_21980	0.67	+1.9
4,815,803	-		AO353_21980	0.67	+0.3
4,815,836	+		AO353_21980	0.73	-1.9
4,815,836	+		AO353_21980	0.73	+0.4
4,815,836	+		AO353_21980	0.73	+0.6
4,815,836	+		AO353_21980	0.73	-1.1
4,815,836	+		AO353_21980	0.73	-1.6
4,815,836	+		AO353_21980	0.73	+1.9
4,815,836	+		AO353_21980	0.73	+1.3
4,815,836	+		AO353_21980	0.73	-2.1
4,815,837	-		AO353_21980	0.73	-0.5
4,815,837	-		AO353_21980	0.73	-0.1
4,815,837	-		AO353_21980	0.73	-0.4
4,815,837	-		AO353_21980	0.73	-0.2
4,815,837	-		AO353_21980	0.73	-1.3
4,815,837	-		AO353_21980	0.73	-1.6
4,815,837	-		AO353_21980	0.73	-0.7
4,815,837	-		AO353_21980	0.73	-0.8
4,815,837	-		AO353_21980	0.73	+0.3
4,815,892	+		AO353_21980	0.82	-0.7
4,815,892	+		AO353_21980	0.82	-1.3
4,815,892	+		AO353_21980	0.82	+0.3
4,815,892	+		AO353_21980	0.82	-0.7
4,815,892	+		AO353_21980	0.82	+0.6
4,815,892	+		AO353_21980	0.82	+0.9
4,815,892	+		AO353_21980	0.82	-1.3
4,815,892	+		AO353_21980	0.82	-1.5
4,815,893	-		AO353_21980	0.82	+0.3
4,815,893	-		AO353_21980	0.82	+0.6
4,815,893	-		AO353_21980	0.82	+2.4
4,815,893	-		AO353_21980	0.82	+2.6
4,815,934	+		AO353_21980	0.89	-1.5
4,815,934	+		AO353_21980	0.89	-1.9
4,815,935	-		AO353_21980	0.89	-0.5
4,815,935	-		AO353_21980	0.89	+0.5
4,815,935	-		AO353_21980	0.89	-1.7
4,815,935	-		AO353_21980	0.89	+1.1
4,815,982	+				-1.7
4,815,982	+				-0.9
4,815,983	-				+0.5
4,815,983	-				+2.4
4,815,983	-				+0.9
4,815,983	-				-0.7
4,816,007	+				-2.2
4,816,007	+				-0.5
4,816,007	+				+0.4
4,816,007	+				-0.5
4,816,008	-				+0.4
4,816,008	-				-0.3
4,816,057	+		AO353_21985	0.19	+0.3
4,816,263	+				+0.3
4,816,333	+				+1.9
4,816,333	+				+1.1
4,816,334	-				-1.8
4,816,341	+				-0.5
4,816,341	+				+0.9
4,816,428	+				-0.3
4,816,428	+				+0.5
4,816,429	-				-0.9
4,816,430	+				-1.1
4,816,492	+				-0.5
4,816,493	-				-0.1
4,816,493	-				+0.1
4,816,565	+				+0.9
4,816,565	+				-1.3
4,816,565	+				-2.9
4,816,565	+				+0.5
4,816,565	+				-2.7
4,816,565	+				-2.2
4,816,565	+				-0.3
4,816,565	+				+2.2
4,816,565	+				-1.7
4,816,566	-				-0.5
4,816,566	-				-0.1
4,816,566	-				-0.5
4,816,613	+		AO353_21990	0.20	-0.7
4,816,614	-		AO353_21990	0.20	+1.9
4,816,659	+		AO353_21990	0.30	-0.1
4,816,659	+		AO353_21990	0.30	+1.3
4,816,725	+		AO353_21990	0.45	+0.3
4,816,726	-		AO353_21990	0.45	-0.1
4,816,742	+		AO353_21990	0.49	+0.0
4,816,742	+		AO353_21990	0.49	+0.3
4,816,742	+		AO353_21990	0.49	-0.1
4,816,742	+		AO353_21990	0.49	-1.5
4,816,933	+				+1.9