Strain Fitness in Pseudomonas fluorescens FW300-N2E3 around AO353_17720

Experiment: Nitrate reduction, replicate C

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Nitrate reduction, replicate C
3,901,775	+		AO353_17710	0.77	-1.0
3,901,775	+		AO353_17710	0.77	+1.2
3,901,775	+		AO353_17710	0.77	-1.7
3,901,775	+		AO353_17710	0.77	-1.0
3,901,775	+		AO353_17710	0.77	-0.4
3,901,775	+		AO353_17710	0.77	-0.6
3,901,776	-		AO353_17710	0.77	+0.6
3,901,776	-		AO353_17710	0.77	+1.6
3,901,776	-		AO353_17710	0.77	+2.0
3,901,776	-		AO353_17710	0.77	-1.7
3,901,776	-		AO353_17710	0.77	-0.7
3,901,776	-		AO353_17710	0.77	-2.1
3,901,776	-		AO353_17710	0.77	+0.0
3,901,776	-		AO353_17710	0.77	+2.6
3,901,944	+				-0.1
3,901,944	+				-3.2
3,901,944	+				+1.0
3,901,944	+				+0.8
3,901,944	+				+2.0
3,901,944	+				-0.5
3,901,944	+				+0.4
3,901,945	-				-1.5
3,901,945	-				+1.2
3,901,945	-				+0.0
3,901,945	-				+0.9
3,901,945	-				+0.6
3,901,945	-				-0.7
3,901,945	-				-2.4
3,901,945	-				+0.6
3,901,945	-				+0.0
3,901,948	+				-0.7
3,901,948	+				+1.4
3,901,967	+				-1.0
3,901,968	-				-0.7
3,901,968	-				-0.4
3,901,968	-				+1.4
3,902,014	-				+1.6
3,902,042	-		AO353_17715	0.11	+0.9
3,902,051	+		AO353_17715	0.12	+1.5
3,902,052	-		AO353_17715	0.12	+0.5
3,902,052	-		AO353_17715	0.12	-0.7
3,902,072	+		AO353_17715	0.15	-0.2
3,902,072	+		AO353_17715	0.15	-0.2
3,902,072	+		AO353_17715	0.15	-0.4
3,902,072	+		AO353_17715	0.15	-1.9
3,902,072	+		AO353_17715	0.15	-0.9
3,902,072	+		AO353_17715	0.15	+0.6
3,902,073	-		AO353_17715	0.15	+0.3
3,902,073	-		AO353_17715	0.15	+0.5
3,902,073	-		AO353_17715	0.15	-0.4
3,902,073	-		AO353_17715	0.15	-1.0
3,902,073	-		AO353_17715	0.15	-2.3
3,902,073	-		AO353_17715	0.15	+0.0
3,902,073	-		AO353_17715	0.15	-0.7
3,902,084	+		AO353_17715	0.16	+0.0
3,902,085	-		AO353_17715	0.17	-2.1
3,902,263	+		AO353_17715	0.41	+1.0
3,902,263	+		AO353_17715	0.41	+0.0
3,902,264	-		AO353_17715	0.42	-0.2
3,902,264	-		AO353_17715	0.42	-0.4
3,902,333	+		AO353_17715	0.51	+0.0
3,902,334	-		AO353_17715	0.51	+0.6
3,902,393	+		AO353_17715	0.60	-0.6
3,902,393	+		AO353_17715	0.60	-1.0
3,902,393	+		AO353_17715	0.60	+1.2
3,902,394	-		AO353_17715	0.60	-1.1
3,902,394	-		AO353_17715	0.60	+0.5
3,902,394	-		AO353_17715	0.60	-1.8
3,902,450	+		AO353_17715	0.68	+0.4
3,902,451	-		AO353_17715	0.68	+0.0
3,902,451	-		AO353_17715	0.68	+2.0
3,902,451	-		AO353_17715	0.68	+0.6
3,902,451	-		AO353_17715	0.68	-0.8
3,902,451	-		AO353_17715	0.68	+0.4
3,902,451	-		AO353_17715	0.68	+0.5
3,902,451	-		AO353_17715	0.68	-2.0
3,902,451	-		AO353_17715	0.68	+0.6
3,902,451	-		AO353_17715	0.68	+0.3
3,902,451	-		AO353_17715	0.68	+0.6
3,902,459	+		AO353_17715	0.69	+0.2
3,902,459	+		AO353_17715	0.69	+0.0
3,902,460	-				-0.7
3,902,460	-		AO353_17715	0.69	-0.9
3,902,460	-		AO353_17715	0.69	+0.6
3,902,460	-		AO353_17715	0.69	-0.7
3,902,460	-		AO353_17715	0.69	+1.6
3,902,501	+		AO353_17715	0.75	+0.3
3,902,501	+		AO353_17715	0.75	-0.4
3,902,502	-		AO353_17715	0.75	-1.3
3,902,502	-		AO353_17715	0.75	-0.3
3,902,502	-		AO353_17715	0.75	-0.1
3,902,569	+		AO353_17715	0.84	-1.5
3,902,569	+		AO353_17715	0.84	-0.4
3,902,569	+		AO353_17715	0.84	-1.7
3,902,569	+		AO353_17715	0.84	+1.6
3,902,570	-		AO353_17715	0.84	-0.7
3,902,570	-		AO353_17715	0.84	-0.6
3,902,570	-		AO353_17715	0.84	+1.0
3,902,602	+		AO353_17715	0.89	+0.6
3,902,665	+				-0.6
3,902,665	+				-0.4
3,902,666	-				+1.2
3,902,682	+				+0.6
3,902,682	+				-0.8
3,902,682	+				-0.7
3,902,682	+				+0.3
3,902,682	+				-1.7
3,902,708	+				+1.3
3,902,708	+				-0.5
3,902,708	+				+1.6
3,902,708	+				-0.4
3,902,708	+				-1.0
3,902,708	+				-0.7
3,902,709	-				+0.6
3,902,709	-				+1.6
3,902,758	+				-0.1
3,902,758	+				-1.5
3,902,758	+				-1.7
3,902,758	+				+1.2
3,902,758	+				-0.8
3,902,759	-				-0.2
3,902,759	-				-1.0
3,902,759	-				-2.5
3,902,759	-				-1.0
3,902,759	-				-1.2
3,902,759	-				-1.5
3,902,759	-				-1.6
3,902,771	+				-0.4
3,902,771	+				-0.7
3,902,771	+				-0.7
3,902,771	+				+0.6
3,902,772	-				-0.4
3,902,772	-				-1.5
3,902,792	-				+0.0
3,902,879	+		AO353_17720	0.15	+0.0
3,902,879	+		AO353_17720	0.15	-1.0
3,902,880	-		AO353_17720	0.15	+3.6
3,903,046	-		AO353_17720	0.34	-0.5
3,903,096	+		AO353_17720	0.40	-0.4
3,903,096	+		AO353_17720	0.40	-1.1
3,903,097	-		AO353_17720	0.40	+0.0
3,903,097	-		AO353_17720	0.40	-1.7
3,903,097	-		AO353_17720	0.40	-0.7
3,903,097	-		AO353_17720	0.40	-0.4
3,903,097	-				-1.7
3,903,097	-		AO353_17720	0.40	-0.4
3,903,116	-		AO353_17720	0.43	+1.0
3,903,168	-		AO353_17720	0.49	-1.1
3,903,168	-		AO353_17720	0.49	-1.0
3,903,271	-		AO353_17720	0.61	-1.7
3,903,290	+		AO353_17720	0.63	+0.3
3,903,290	+		AO353_17720	0.63	-1.0
3,903,425	-		AO353_17720	0.79	-0.7
3,903,425	-		AO353_17720	0.79	-0.8
3,903,489	+		AO353_17720	0.86	-1.5
3,903,489	+		AO353_17720	0.86	-0.5
3,903,490	-		AO353_17720	0.86	-1.2
3,903,509	-		AO353_17720	0.88	-0.7
3,903,613	+				+0.0
3,903,613	+				+0.3
3,903,613	+				+0.0
3,903,613	+				-2.0
3,903,614	-				+0.2
3,903,678	+				-1.8
3,903,688	+				-1.4
3,903,688	+				+1.6
3,903,689	-				-1.1
3,903,689	-				+0.0
3,903,689	-				-0.4
3,903,689	-				-1.4
3,903,689	-				-0.3
3,903,700	+				-0.6
3,903,700	+				-2.5
3,903,700	+				+2.6
3,903,701	-				+0.8
3,903,701	-				-2.4
3,903,705	+				-0.8
3,903,705	+				+0.0
3,903,705	+				-0.2
3,903,705	+				-1.0
3,903,705	+				-0.6
3,903,705	+				-1.0
3,903,705	+				+1.3
3,903,705	+				+0.2
3,903,705	+				-0.4
3,903,706	-				-1.0
3,903,706	-				-0.7
3,903,706	-				-0.4
3,903,706	-				-2.3
3,903,706	-				-0.7
3,903,706	-				-0.7
3,903,706	-				-0.4
3,903,715	+				+2.2
3,903,716	-				+0.6
3,903,764	+				+1.0
3,903,764	+				+1.1
3,903,765	-				-0.5
3,903,765	-				-1.4
3,903,765	-				+0.8
3,903,765	-				+0.0
3,903,765	-				-1.0
3,903,775	+				-0.7
3,903,775	+				+0.5
3,903,776	-				+0.0
3,903,807	+				-2.0
3,903,807	+				-0.2
3,903,808	-				-0.4
3,903,817	+				-2.4
3,903,817	+				+0.6
3,903,817	+				+1.6
3,903,817	+				-0.4
3,903,817	+				-1.0
3,903,817	+				-0.1
3,903,817	+				-1.2
3,903,817	+				-0.5
3,903,818	-				-0.5
3,903,818	-				+1.6
3,903,818	-				+0.3
3,903,818	-				-1.0
3,903,818	-				+0.0
3,903,818	-				-0.4
3,903,818	-				+2.6
3,903,818	-				+0.6
3,903,821	+				-0.1
3,903,821	+				-1.6
3,903,821	+				+1.1
3,903,821	+				+0.6
3,903,821	+				+1.0
3,903,821	+				+0.4
3,903,821	+				-0.4
3,903,821	+				+2.6
3,903,821	+				-0.8
3,903,822	-				-1.9
3,903,822	-				-0.2
3,903,822	-				+1.3
3,903,822	-				+2.2
3,903,822	-				+0.6
3,903,822	-				-0.2
3,903,822	-				-0.8
3,903,822	-				-1.2
3,903,822	-				-0.6
3,903,822	-				-1.2
3,903,822	-				+0.0
3,903,822	-				+0.3
3,903,827	+				+1.6
3,903,827	+				+0.8
3,903,828	-				+0.3
3,903,828	-				+0.3
3,903,828	-				-0.1
3,903,831	+				+0.7
3,903,831	+				-0.8
3,903,831	+				-0.7
3,903,831	+				-0.4
3,903,831	+				-1.5
3,903,831	+				-3.1
3,903,832	-				-2.4
3,903,832	-				-0.4
3,903,832	-				+0.0
3,903,832	-				+0.0
3,903,860	+				-1.5
3,903,876	+				-1.2
3,903,876	+				-0.4
3,903,876	+				-1.0
3,903,876	+				+2.2
3,903,877	-				-0.7
3,903,877	-				+0.4
3,903,878	+				-1.5
3,903,969	+				+0.3
3,903,970	-				-0.1
3,903,970	-				-0.1
3,903,970	-				-1.4
3,904,086	+				-0.8
3,904,086	+				+0.0
3,904,086	+				-3.6
3,904,086	+				+0.6
3,904,086	+				-0.4
3,904,086	+				-0.5
3,904,086	+				+2.2
3,904,086	+				+1.2
3,904,087	-				-0.4
3,904,087	-				+1.6
3,904,087	-				+0.0
3,904,129	-				+2.1
3,904,129	-				-0.6
3,904,224	+				-0.9
3,904,224	+				-0.4
3,904,224	+				+0.6
3,904,339	-		AO353_17725	0.14	+0.0
3,904,443	+		AO353_17725	0.21	-0.4
3,904,443	+		AO353_17725	0.21	-1.8
3,904,443	+		AO353_17725	0.21	+0.0
3,904,443	+		AO353_17725	0.21	-0.7
3,904,443	+		AO353_17725	0.21	-1.7
3,904,443	+		AO353_17725	0.21	-1.4
3,904,444	-		AO353_17725	0.21	-0.8
3,904,444	-		AO353_17725	0.21	+1.0
3,904,444	-		AO353_17725	0.21	-1.2
3,904,444	-		AO353_17725	0.21	-1.4
3,904,444	-		AO353_17725	0.21	+0.2
3,904,444	-		AO353_17725	0.21	-1.3
3,904,444	-		AO353_17725	0.21	-1.2
3,904,444	-		AO353_17725	0.21	+0.4
3,904,507	-		AO353_17725	0.25	-0.7
3,904,507	-		AO353_17725	0.25	-0.4
3,904,507	-		AO353_17725	0.25	+0.6
3,904,507	-		AO353_17725	0.25	+1.6