Experiment: nitrogen source nitrite 0.5mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR87_RS19080 and ABZR87_RS19085 are separated by 398 nucleotides ABZR87_RS19085 and ABZR87_RS19090 are separated by 34 nucleotides ABZR87_RS19090 and ABZR87_RS19095 are separated by 34 nucleotides
ABZR87_RS19080: ABZR87_RS19080 - Zn-dependent hydrolase, at 641,864 to 643,087
_RS19080
ABZR87_RS19085: ABZR87_RS19085 - 3,4-dihydroxy-2-butanone-4-phosphate synthase, at 643,486 to 644,211
_RS19085
ABZR87_RS19090: ABZR87_RS19090 - bifunctional 4-hydroxy-2-oxoglutarate aldolase/2-dehydro-3-deoxy-phosphogluconate aldolase, at 644,246 to 644,872
_RS19090
ABZR87_RS19095: ABZR87_RS19095 - gluconate:H+ symporter, at 644,907 to 646,259
_RS19095
Position (kb) 643
644
645 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1
2
3
4 at 642.609 kb on + strand, within ABZR87_RS19080 at 642.609 kb on + strand, within ABZR87_RS19080 at 642.610 kb on - strand, within ABZR87_RS19080 at 643.103 kb on - strand at 643.103 kb on - strand at 643.103 kb on - strand at 643.108 kb on + strand at 643.109 kb on - strand at 643.118 kb on + strand at 643.118 kb on + strand at 643.141 kb on + strand at 643.142 kb on - strand at 643.170 kb on + strand at 643.205 kb on + strand at 643.205 kb on + strand at 643.205 kb on + strand at 643.205 kb on + strand at 643.205 kb on + strand at 643.206 kb on - strand at 643.206 kb on - strand at 643.243 kb on - strand at 643.378 kb on + strand at 643.378 kb on + strand at 643.379 kb on - strand at 643.961 kb on + strand, within ABZR87_RS19085 at 643.961 kb on + strand, within ABZR87_RS19085 at 643.961 kb on + strand, within ABZR87_RS19085 at 643.962 kb on - strand, within ABZR87_RS19085 at 643.962 kb on - strand, within ABZR87_RS19085 at 643.962 kb on - strand, within ABZR87_RS19085 at 644.010 kb on + strand, within ABZR87_RS19085 at 644.010 kb on + strand, within ABZR87_RS19085 at 644.011 kb on - strand, within ABZR87_RS19085 at 644.067 kb on - strand, within ABZR87_RS19085 at 644.883 kb on + strand at 644.883 kb on + strand at 644.884 kb on - strand at 644.908 kb on + strand at 644.909 kb on - strand at 644.909 kb on - strand at 645.013 kb on + strand at 645.013 kb on + strand at 645.013 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction nitrogen source nitrite 0.5mM remove 642,609 + ABZR87_RS19080 0.61 +0.0 642,609 + ABZR87_RS19080 0.61 +0.3 642,610 - ABZR87_RS19080 0.61 -1.5 643,103 - -0.9 643,103 - +1.1 643,103 - +1.2 643,108 + -0.5 643,109 - +4.6 643,118 + -3.4 643,118 + +0.7 643,141 + +1.5 643,142 - -2.5 643,170 + +0.9 643,205 + +0.7 643,205 + -0.3 643,205 + +0.2 643,205 + -1.4 643,205 + -1.6 643,206 - -2.8 643,206 - +0.5 643,243 - -3.6 643,378 + +1.7 643,378 + -2.7 643,379 - -1.0 643,961 + ABZR87_RS19085 0.65 -2.3 643,961 + ABZR87_RS19085 0.65 -1.5 643,961 + ABZR87_RS19085 0.65 -2.3 643,962 - ABZR87_RS19085 0.66 -3.9 643,962 - ABZR87_RS19085 0.66 -1.6 643,962 - ABZR87_RS19085 0.66 -0.8 644,010 + ABZR87_RS19085 0.72 -3.3 644,010 + ABZR87_RS19085 0.72 -0.1 644,011 - ABZR87_RS19085 0.72 +0.9 644,067 - ABZR87_RS19085 0.80 +0.1 644,883 + -0.9 644,883 + -0.5 644,884 - -1.0 644,908 + -1.5 644,909 - -2.7 644,909 - -1.5 645,013 + +0.0 645,013 + -4.9 645,013 + -4.0
Or see this region's nucleotide sequence