Strain Fitness in Ralstonia sp. UNC404CL21Col around ABZR87_RS03900

Experiment: nitrogen source nitrite 0.5mM

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntABZR87_RS03895 and ABZR87_RS03900 are separated by 65 nucleotidesABZR87_RS03900 and ABZR87_RS03905 are separated by 621 nucleotides ABZR87_RS03895: ABZR87_RS03895 - 2-hydroxy-3-oxopropionate reductase, at 804,642 to 805,553 _RS03895 ABZR87_RS03900: ABZR87_RS03900 - glycerate kinase, at 805,619 to 806,938 _RS03900 ABZR87_RS03905: ABZR87_RS03905 - pyruvate kinase, at 807,560 to 809,038 _RS03905 Position (kb) 805 806 807Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3 4at 804.827 kb on + strand, within ABZR87_RS03895at 804.827 kb on + strand, within ABZR87_RS03895at 804.827 kb on + strand, within ABZR87_RS03895at 804.828 kb on - strand, within ABZR87_RS03895at 804.828 kb on - strand, within ABZR87_RS03895at 804.828 kb on - strand, within ABZR87_RS03895at 804.828 kb on - strand, within ABZR87_RS03895at 804.828 kb on - strand, within ABZR87_RS03895at 804.828 kb on - strand, within ABZR87_RS03895at 804.828 kb on - strand, within ABZR87_RS03895at 804.828 kb on - strand, within ABZR87_RS03895at 804.828 kb on - strand, within ABZR87_RS03895at 805.014 kb on + strand, within ABZR87_RS03895at 805.014 kb on + strand, within ABZR87_RS03895at 805.014 kb on + strand, within ABZR87_RS03895at 805.014 kb on + strand, within ABZR87_RS03895at 805.015 kb on - strand, within ABZR87_RS03895at 805.015 kb on - strand, within ABZR87_RS03895at 805.346 kb on + strand, within ABZR87_RS03895at 805.346 kb on + strand, within ABZR87_RS03895at 805.346 kb on + strand, within ABZR87_RS03895at 805.346 kb on + strand, within ABZR87_RS03895at 805.346 kb on + strand, within ABZR87_RS03895at 805.346 kb on + strand, within ABZR87_RS03895at 805.346 kb on + strand, within ABZR87_RS03895at 805.346 kb on + strand, within ABZR87_RS03895at 805.347 kb on - strand, within ABZR87_RS03895at 805.347 kb on - strand, within ABZR87_RS03895at 805.347 kb on - strand, within ABZR87_RS03895at 805.544 kb on + strandat 805.551 kb on + strandat 805.551 kb on + strandat 805.551 kb on + strandat 805.551 kb on + strandat 805.552 kb on - strandat 805.552 kb on - strandat 806.319 kb on - strand, within ABZR87_RS03900at 806.319 kb on - strand, within ABZR87_RS03900at 806.319 kb on - strand, within ABZR87_RS03900at 806.319 kb on - strand, within ABZR87_RS03900at 806.319 kb on - strand, within ABZR87_RS03900at 806.319 kb on - strand, within ABZR87_RS03900at 806.319 kb on - strand, within ABZR87_RS03900at 806.480 kb on + strand, within ABZR87_RS03900at 806.633 kb on + strand, within ABZR87_RS03900at 806.639 kb on - strand, within ABZR87_RS03900at 806.728 kb on + strand, within ABZR87_RS03900at 806.846 kb on + strandat 806.847 kb on - strandat 806.899 kb on + strandat 806.900 kb on - strandat 806.900 kb on - strandat 806.900 kb on - strandat 806.900 kb on - strandat 806.929 kb on + strandat 806.930 kb on - strandat 807.171 kb on + strandat 807.171 kb on + strandat 807.302 kb on + strandat 807.334 kb on + strandat 807.534 kb on + strandat 807.534 kb on + strandat 807.534 kb on + strandat 807.534 kb on + strandat 807.534 kb on + strandat 807.534 kb on + strandat 807.534 kb on + strandat 807.534 kb on + strandat 807.534 kb on + strandat 807.535 kb on - strandat 807.535 kb on - strandat 807.535 kb on - strandat 807.535 kb on - strandat 807.535 kb on - strandat 807.535 kb on - strandat 807.535 kb on - strandat 807.597 kb on + strandat 807.598 kb on - strandat 807.598 kb on - strandat 807.708 kb on - strand, within ABZR87_RS03905at 807.708 kb on - strand, within ABZR87_RS03905at 807.902 kb on + strand, within ABZR87_RS03905at 807.903 kb on - strand, within ABZR87_RS03905at 807.903 kb on - strand, within ABZR87_RS03905at 807.903 kb on - strand, within ABZR87_RS03905at 807.903 kb on - strand, within ABZR87_RS03905

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction nitrogen source nitrite 0.5mM
remove
804,827 + ABZR87_RS03895 0.20 +1.1
804,827 + ABZR87_RS03895 0.20 -0.7
804,827 + ABZR87_RS03895 0.20 +1.4
804,828 - ABZR87_RS03895 0.20 +1.4
804,828 - ABZR87_RS03895 0.20 +1.1
804,828 - ABZR87_RS03895 0.20 -0.4
804,828 - ABZR87_RS03895 0.20 -1.7
804,828 - ABZR87_RS03895 0.20 -0.1
804,828 - ABZR87_RS03895 0.20 +3.9
804,828 - ABZR87_RS03895 0.20 +0.1
804,828 - ABZR87_RS03895 0.20 -0.8
804,828 - ABZR87_RS03895 0.20 -0.5
805,014 + ABZR87_RS03895 0.41 +0.6
805,014 + ABZR87_RS03895 0.41 +0.5
805,014 + ABZR87_RS03895 0.41 +0.3
805,014 + ABZR87_RS03895 0.41 +0.6
805,015 - ABZR87_RS03895 0.41 +0.6
805,015 - ABZR87_RS03895 0.41 +0.9
805,346 + ABZR87_RS03895 0.77 +1.1
805,346 + ABZR87_RS03895 0.77 -1.9
805,346 + ABZR87_RS03895 0.77 +1.3
805,346 + ABZR87_RS03895 0.77 +1.3
805,346 + ABZR87_RS03895 0.77 -1.1
805,346 + ABZR87_RS03895 0.77 +1.2
805,346 + ABZR87_RS03895 0.77 +0.8
805,346 + ABZR87_RS03895 0.77 -3.1
805,347 - ABZR87_RS03895 0.77 +0.8
805,347 - ABZR87_RS03895 0.77 +0.3
805,347 - ABZR87_RS03895 0.77 +0.3
805,544 + +2.3
805,551 + -0.6
805,551 + -2.1
805,551 + +1.0
805,551 + +0.5
805,552 - -2.5
805,552 - -1.8
806,319 - ABZR87_RS03900 0.53 -0.4
806,319 - ABZR87_RS03900 0.53 -2.9
806,319 - ABZR87_RS03900 0.53 -0.6
806,319 - ABZR87_RS03900 0.53 -0.6
806,319 - ABZR87_RS03900 0.53 -0.3
806,319 - ABZR87_RS03900 0.53 -2.8
806,319 - ABZR87_RS03900 0.53 -2.2
806,480 + ABZR87_RS03900 0.65 -0.5
806,633 + ABZR87_RS03900 0.77 -1.6
806,639 - ABZR87_RS03900 0.77 -0.5
806,728 + ABZR87_RS03900 0.84 -1.0
806,846 + -0.4
806,847 - +0.4
806,899 + -0.0
806,900 - +0.2
806,900 - -4.0
806,900 - +1.3
806,900 - -0.5
806,929 + -0.7
806,930 - +1.5
807,171 + +1.3
807,171 + -2.8
807,302 + +0.5
807,334 + +2.0
807,534 + +0.4
807,534 + +1.4
807,534 + +0.0
807,534 + +1.4
807,534 + -0.2
807,534 + -0.8
807,534 + -2.4
807,534 + -2.3
807,534 + +0.6
807,535 - -0.8
807,535 - -1.8
807,535 - +1.3
807,535 - +0.9
807,535 - +0.3
807,535 - +0.4
807,535 - +1.2
807,597 + +0.5
807,598 - +3.1
807,598 - -1.3
807,708 - ABZR87_RS03905 0.10 +0.4
807,708 - ABZR87_RS03905 0.10 -0.5
807,902 + ABZR87_RS03905 0.23 +0.3
807,903 - ABZR87_RS03905 0.23 -1.8
807,903 - ABZR87_RS03905 0.23 -1.8
807,903 - ABZR87_RS03905 0.23 -1.7
807,903 - ABZR87_RS03905 0.23 -2.5

Or see this region's nucleotide sequence