Experiment: nitrogen source nitrite 0.5mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR87_RS17885 and ABZR87_RS17890 are separated by 155 nucleotides ABZR87_RS17890 and ABZR87_RS17895 are separated by 259 nucleotides ABZR87_RS17895 and ABZR87_RS17900 overlap by 17 nucleotides ABZR87_RS17900 and ABZR87_RS17905 are separated by 27 nucleotides
ABZR87_RS17885: ABZR87_RS17885 - membrane protein, at 369,080 to 370,696
_RS17885
ABZR87_RS17890: ABZR87_RS17890 - FlxA-like family protein, at 370,852 to 371,364
_RS17890
ABZR87_RS17895: ABZR87_RS17895 - ABC transporter ATP-binding protein, at 371,624 to 372,445
_RS17895
ABZR87_RS17900: ABZR87_RS17900 - ABC transporter permease, at 372,429 to 373,259
_RS17900
ABZR87_RS17905: ABZR87_RS17905 - ABC transporter substrate-binding protein, at 373,287 to 374,291
_RS17905
Position (kb) 371
372
373 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3
4
5 at 370.972 kb on + strand, within ABZR87_RS17890 at 370.973 kb on - strand, within ABZR87_RS17890 at 370.973 kb on - strand, within ABZR87_RS17890 at 371.028 kb on + strand, within ABZR87_RS17890 at 371.028 kb on + strand, within ABZR87_RS17890 at 371.029 kb on - strand, within ABZR87_RS17890 at 371.029 kb on - strand, within ABZR87_RS17890 at 371.029 kb on - strand, within ABZR87_RS17890 at 371.307 kb on + strand, within ABZR87_RS17890 at 371.386 kb on + strand at 371.401 kb on + strand at 371.401 kb on + strand at 371.401 kb on + strand at 371.402 kb on - strand at 371.402 kb on - strand at 371.530 kb on + strand at 371.530 kb on + strand at 371.531 kb on - strand at 371.540 kb on - strand at 372.383 kb on + strand at 372.444 kb on - strand at 372.444 kb on - strand at 372.455 kb on + strand at 372.455 kb on + strand at 372.456 kb on - strand at 372.582 kb on + strand, within ABZR87_RS17900 at 372.646 kb on - strand, within ABZR87_RS17900 at 372.646 kb on - strand, within ABZR87_RS17900 at 372.646 kb on - strand, within ABZR87_RS17900 at 372.646 kb on - strand, within ABZR87_RS17900 at 372.646 kb on - strand, within ABZR87_RS17900 at 372.646 kb on - strand, within ABZR87_RS17900 at 372.646 kb on - strand, within ABZR87_RS17900 at 372.896 kb on + strand, within ABZR87_RS17900 at 372.896 kb on + strand, within ABZR87_RS17900 at 372.896 kb on + strand, within ABZR87_RS17900 at 372.896 kb on + strand, within ABZR87_RS17900 at 372.897 kb on - strand, within ABZR87_RS17900 at 372.897 kb on - strand, within ABZR87_RS17900 at 372.897 kb on - strand, within ABZR87_RS17900 at 372.897 kb on - strand, within ABZR87_RS17900 at 372.897 kb on - strand, within ABZR87_RS17900 at 372.897 kb on - strand, within ABZR87_RS17900 at 372.900 kb on + strand, within ABZR87_RS17900 at 372.900 kb on + strand, within ABZR87_RS17900 at 372.900 kb on + strand, within ABZR87_RS17900 at 372.900 kb on + strand, within ABZR87_RS17900 at 372.901 kb on - strand, within ABZR87_RS17900 at 372.901 kb on - strand, within ABZR87_RS17900 at 372.901 kb on - strand, within ABZR87_RS17900 at 372.987 kb on + strand, within ABZR87_RS17900 at 372.987 kb on + strand, within ABZR87_RS17900 at 372.987 kb on + strand, within ABZR87_RS17900 at 372.987 kb on + strand, within ABZR87_RS17900 at 372.987 kb on + strand, within ABZR87_RS17900 at 372.987 kb on + strand, within ABZR87_RS17900 at 372.987 kb on + strand, within ABZR87_RS17900 at 372.987 kb on + strand, within ABZR87_RS17900 at 372.987 kb on + strand, within ABZR87_RS17900 at 372.987 kb on + strand, within ABZR87_RS17900 at 372.987 kb on + strand, within ABZR87_RS17900 at 372.987 kb on + strand, within ABZR87_RS17900 at 372.987 kb on + strand, within ABZR87_RS17900 at 372.987 kb on + strand, within ABZR87_RS17900 at 372.987 kb on + strand, within ABZR87_RS17900 at 372.987 kb on + strand, within ABZR87_RS17900 at 372.988 kb on - strand, within ABZR87_RS17900 at 372.988 kb on - strand, within ABZR87_RS17900 at 372.988 kb on - strand, within ABZR87_RS17900 at 372.988 kb on - strand, within ABZR87_RS17900 at 372.988 kb on - strand, within ABZR87_RS17900 at 373.071 kb on + strand, within ABZR87_RS17900 at 373.398 kb on + strand, within ABZR87_RS17905 at 373.398 kb on + strand, within ABZR87_RS17905 at 373.398 kb on + strand, within ABZR87_RS17905 at 373.399 kb on - strand, within ABZR87_RS17905 at 373.399 kb on - strand, within ABZR87_RS17905 at 373.399 kb on - strand, within ABZR87_RS17905 at 373.415 kb on + strand, within ABZR87_RS17905 at 373.416 kb on - strand, within ABZR87_RS17905
Per-strain Table
Position Strand Gene LocusTag Fraction nitrogen source nitrite 0.5mM remove 370,972 + ABZR87_RS17890 0.23 -2.3 370,973 - ABZR87_RS17890 0.24 +1.2 370,973 - ABZR87_RS17890 0.24 -0.1 371,028 + ABZR87_RS17890 0.34 -0.7 371,028 + ABZR87_RS17890 0.34 +0.9 371,029 - ABZR87_RS17890 0.35 +1.4 371,029 - ABZR87_RS17890 0.35 -0.6 371,029 - ABZR87_RS17890 0.35 -0.2 371,307 + ABZR87_RS17890 0.89 +1.2 371,386 + +0.2 371,401 + -0.9 371,401 + -0.8 371,401 + +0.2 371,402 - -0.1 371,402 - +0.1 371,530 + -0.6 371,530 + +1.4 371,531 - +0.3 371,540 - -2.8 372,383 + -4.0 372,444 - -0.4 372,444 - +0.1 372,455 + +0.7 372,455 + +0.4 372,456 - -0.2 372,582 + ABZR87_RS17900 0.18 -2.7 372,646 - ABZR87_RS17900 0.26 -0.3 372,646 - ABZR87_RS17900 0.26 -0.2 372,646 - ABZR87_RS17900 0.26 -3.3 372,646 - ABZR87_RS17900 0.26 -2.6 372,646 - ABZR87_RS17900 0.26 -0.2 372,646 - ABZR87_RS17900 0.26 +0.4 372,646 - ABZR87_RS17900 0.26 +0.6 372,896 + ABZR87_RS17900 0.56 -0.5 372,896 + ABZR87_RS17900 0.56 +1.5 372,896 + ABZR87_RS17900 0.56 +0.8 372,896 + ABZR87_RS17900 0.56 +0.4 372,897 - ABZR87_RS17900 0.56 -0.3 372,897 - ABZR87_RS17900 0.56 -1.4 372,897 - ABZR87_RS17900 0.56 +0.9 372,897 - ABZR87_RS17900 0.56 -0.2 372,897 - ABZR87_RS17900 0.56 -0.7 372,897 - ABZR87_RS17900 0.56 -1.7 372,900 + ABZR87_RS17900 0.57 -0.6 372,900 + ABZR87_RS17900 0.57 +0.5 372,900 + ABZR87_RS17900 0.57 -0.2 372,900 + ABZR87_RS17900 0.57 +0.1 372,901 - ABZR87_RS17900 0.57 +0.6 372,901 - ABZR87_RS17900 0.57 +0.3 372,901 - ABZR87_RS17900 0.57 +1.0 372,987 + ABZR87_RS17900 0.67 +0.8 372,987 + ABZR87_RS17900 0.67 -0.4 372,987 + ABZR87_RS17900 0.67 -2.8 372,987 + ABZR87_RS17900 0.67 +0.2 372,987 + ABZR87_RS17900 0.67 -0.8 372,987 + ABZR87_RS17900 0.67 +0.2 372,987 + ABZR87_RS17900 0.67 +0.4 372,987 + ABZR87_RS17900 0.67 +0.8 372,987 + ABZR87_RS17900 0.67 -3.4 372,987 + ABZR87_RS17900 0.67 -0.1 372,987 + ABZR87_RS17900 0.67 +0.5 372,987 + ABZR87_RS17900 0.67 +0.3 372,987 + ABZR87_RS17900 0.67 -2.6 372,987 + ABZR87_RS17900 0.67 -3.6 372,987 + ABZR87_RS17900 0.67 +2.0 372,987 + ABZR87_RS17900 0.67 -1.1 372,988 - ABZR87_RS17900 0.67 +0.9 372,988 - ABZR87_RS17900 0.67 +0.3 372,988 - ABZR87_RS17900 0.67 -0.4 372,988 - ABZR87_RS17900 0.67 -0.6 372,988 - ABZR87_RS17900 0.67 -0.4 373,071 + ABZR87_RS17900 0.77 -0.0 373,398 + ABZR87_RS17905 0.11 +0.0 373,398 + ABZR87_RS17905 0.11 +5.4 373,398 + ABZR87_RS17905 0.11 -0.2 373,399 - ABZR87_RS17905 0.11 +0.3 373,399 - ABZR87_RS17905 0.11 +1.3 373,399 - ABZR87_RS17905 0.11 -0.6 373,415 + ABZR87_RS17905 0.13 -3.1 373,416 - ABZR87_RS17905 0.13 +0.2
Or see this region's nucleotide sequence