Experiment: RCH2_defined
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf6N2E2_4999 and Pf6N2E2_5000 overlap by 1 nucleotides Pf6N2E2_5000 and Pf6N2E2_5001 are separated by 168 nucleotides
Pf6N2E2_4999 - Membrane-bound lytic murein transglycosylase B precursor (EC 3.2.1.-), at 5,765,187 to 5,766,197
_4999
Pf6N2E2_5000 - Rare lipoprotein A precursor, at 5,766,197 to 5,767,222
_5000
Pf6N2E2_5001 - D-alanyl-D-alanine carboxypeptidase (EC 3.4.16.4), at 5,767,391 to 5,768,548
_5001
Position (kb) 5766
5767
5768 Strain fitness (log2 ratio) -2
-1
0
1 at 5765.217 kb on + strand at 5765.280 kb on + strand at 5765.280 kb on + strand at 5765.280 kb on + strand at 5765.280 kb on + strand at 5765.281 kb on - strand at 5765.332 kb on - strand, within Pf6N2E2_4999 at 5765.362 kb on + strand at 5765.363 kb on - strand, within Pf6N2E2_4999 at 5765.535 kb on + strand, within Pf6N2E2_4999 at 5765.594 kb on + strand, within Pf6N2E2_4999 at 5765.742 kb on + strand, within Pf6N2E2_4999 at 5765.742 kb on + strand, within Pf6N2E2_4999 at 5765.742 kb on + strand, within Pf6N2E2_4999 at 5765.743 kb on - strand, within Pf6N2E2_4999 at 5765.743 kb on - strand, within Pf6N2E2_4999 at 5765.793 kb on + strand, within Pf6N2E2_4999 at 5765.794 kb on - strand, within Pf6N2E2_4999 at 5765.828 kb on + strand, within Pf6N2E2_4999 at 5765.871 kb on + strand, within Pf6N2E2_4999 at 5765.872 kb on - strand, within Pf6N2E2_4999 at 5765.872 kb on - strand, within Pf6N2E2_4999 at 5766.081 kb on + strand, within Pf6N2E2_4999 at 5766.120 kb on + strand at 5766.120 kb on + strand at 5766.120 kb on + strand at 5766.122 kb on + strand at 5766.122 kb on + strand at 5766.138 kb on + strand at 5766.138 kb on + strand at 5766.138 kb on + strand at 5766.138 kb on + strand at 5766.151 kb on + strand at 5766.151 kb on + strand at 5766.151 kb on + strand at 5766.153 kb on + strand at 5766.153 kb on + strand at 5766.211 kb on + strand at 5766.215 kb on + strand at 5766.215 kb on + strand at 5766.215 kb on + strand at 5766.215 kb on + strand at 5766.215 kb on + strand at 5766.215 kb on + strand at 5766.215 kb on + strand at 5766.215 kb on + strand at 5766.215 kb on + strand at 5766.215 kb on + strand at 5766.215 kb on + strand at 5766.219 kb on + strand at 5767.275 kb on + strand at 5767.275 kb on + strand at 5767.311 kb on + strand at 5767.311 kb on + strand at 5767.311 kb on + strand at 5767.312 kb on - strand at 5767.312 kb on - strand at 5767.602 kb on - strand, within Pf6N2E2_5001 at 5767.904 kb on + strand, within Pf6N2E2_5001
Per-strain Table
Position Strand Gene LocusTag Fraction RCH2_defined remove 5,765,217 + -0.2 5,765,280 + -1.0 5,765,280 + -0.0 5,765,280 + +0.3 5,765,280 + +0.6 5,765,281 - +0.4 5,765,332 - Pf6N2E2_4999 0.14 -0.4 5,765,362 + +1.2 5,765,363 - Pf6N2E2_4999 0.17 -0.2 5,765,535 + Pf6N2E2_4999 0.34 -0.2 5,765,594 + Pf6N2E2_4999 0.40 +0.4 5,765,742 + Pf6N2E2_4999 0.55 -2.0 5,765,742 + Pf6N2E2_4999 0.55 -0.2 5,765,742 + Pf6N2E2_4999 0.55 -0.8 5,765,743 - Pf6N2E2_4999 0.55 +0.1 5,765,743 - Pf6N2E2_4999 0.55 +0.2 5,765,793 + Pf6N2E2_4999 0.60 -2.5 5,765,794 - Pf6N2E2_4999 0.60 -2.5 5,765,828 + Pf6N2E2_4999 0.63 -1.6 5,765,871 + Pf6N2E2_4999 0.68 -1.4 5,765,872 - Pf6N2E2_4999 0.68 +0.2 5,765,872 - Pf6N2E2_4999 0.68 -0.9 5,766,081 + Pf6N2E2_4999 0.88 -2.2 5,766,120 + -0.7 5,766,120 + -0.3 5,766,120 + -0.3 5,766,122 + +0.2 5,766,122 + -0.6 5,766,138 + +0.5 5,766,138 + +0.0 5,766,138 + -1.0 5,766,138 + -0.8 5,766,151 + -0.3 5,766,151 + -0.7 5,766,151 + -0.7 5,766,153 + -1.4 5,766,153 + -1.6 5,766,211 + +0.5 5,766,215 + -0.2 5,766,215 + +0.2 5,766,215 + +0.2 5,766,215 + -0.2 5,766,215 + -0.3 5,766,215 + +0.5 5,766,215 + -0.5 5,766,215 + -0.8 5,766,215 + -0.4 5,766,215 + -1.2 5,766,215 + +0.0 5,766,219 + -1.1 5,767,275 + -0.4 5,767,275 + -0.4 5,767,311 + +0.0 5,767,311 + -0.4 5,767,311 + +0.1 5,767,312 - -0.8 5,767,312 - -0.2 5,767,602 - Pf6N2E2_5001 0.18 +1.2 5,767,904 + Pf6N2E2_5001 0.44 -1.4
Or see this region's nucleotide sequence