Experiment: RCH2_defined
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf6N2E2_4605 and Pf6N2E2_4606 overlap by 4 nucleotides Pf6N2E2_4606 and Pf6N2E2_4607 are separated by 24 nucleotides Pf6N2E2_4607 and Pf6N2E2_4608 are separated by 85 nucleotides
Pf6N2E2_4605 - Dihydroorotase (EC 3.5.2.3), at 5,330,519 to 5,331,790
_4605
Pf6N2E2_4606 - Aspartate carbamoyltransferase (EC 2.1.3.2), at 5,331,787 to 5,332,791
_4606
Pf6N2E2_4607 - Uracil phosphoribosyltransferase (EC 2.4.2.9) / Pyrimidine operon regulatory protein PyrR, at 5,332,816 to 5,333,322
_4607
Pf6N2E2_4608 - Putative Holliday junction resolvase YggF, at 5,333,408 to 5,333,845
_4608
Position (kb)
5331
5332
5333 Strain fitness (log2 ratio)
-1
0
1
2 at 5332.806 kb on - strand at 5332.806 kb on - strand at 5332.806 kb on - strand at 5332.806 kb on - strand at 5332.806 kb on - strand at 5332.806 kb on - strand at 5332.806 kb on - strand at 5332.818 kb on - strand at 5333.036 kb on - strand, within Pf6N2E2_4607 at 5333.036 kb on - strand, within Pf6N2E2_4607 at 5333.036 kb on - strand, within Pf6N2E2_4607 at 5333.036 kb on - strand, within Pf6N2E2_4607 at 5333.036 kb on - strand, within Pf6N2E2_4607 at 5333.136 kb on - strand, within Pf6N2E2_4607 at 5333.232 kb on - strand, within Pf6N2E2_4607 at 5333.232 kb on - strand, within Pf6N2E2_4607 at 5333.232 kb on - strand, within Pf6N2E2_4607 at 5333.368 kb on - strand at 5333.374 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction RCH2_defined remove 5,332,806 - +1.2 5,332,806 - -0.4 5,332,806 - -1.2 5,332,806 - +0.3 5,332,806 - -0.3 5,332,806 - +1.0 5,332,806 - +0.4 5,332,818 - +0.4 5,333,036 - Pf6N2E2_4607 0.43 -0.9 5,333,036 - Pf6N2E2_4607 0.43 +0.3 5,333,036 - Pf6N2E2_4607 0.43 -0.6 5,333,036 - Pf6N2E2_4607 0.43 -0.8 5,333,036 - Pf6N2E2_4607 0.43 -0.2 5,333,136 - Pf6N2E2_4607 0.63 +0.4 5,333,232 - Pf6N2E2_4607 0.82 +1.7 5,333,232 - Pf6N2E2_4607 0.82 +1.2 5,333,232 - Pf6N2E2_4607 0.82 +0.2 5,333,368 - -0.5 5,333,374 - +1.8
Or see this region's nucleotide sequence