Experiment: RCH2_defined
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf6N2E2_275 and Pf6N2E2_276 are separated by 72 nucleotides Pf6N2E2_276 and Pf6N2E2_277 are separated by 10 nucleotides Pf6N2E2_277 and Pf6N2E2_278 are separated by 871 nucleotides
Pf6N2E2_275 - NADH-ubiquinone oxidoreductase chain C (EC 1.6.5.3) / NADH-ubiquinone oxidoreductase chain D (EC 1.6.5.3), at 340,017 to 341,801
_275
Pf6N2E2_276 - NADH-ubiquinone oxidoreductase chain B (EC 1.6.5.3), at 341,874 to 342,548
_276
Pf6N2E2_277 - NADH ubiquinone oxidoreductase chain A (EC 1.6.5.3), at 342,559 to 342,972
_277
Pf6N2E2_278 - Methyl-accepting chemotaxis protein I (serine chemoreceptor protein), at 343,844 to 345,766
_278
Position (kb) 342
343 Strain fitness (log2 ratio) -2
-1
0
1 at 341.828 kb on - strand at 343.016 kb on - strand at 343.036 kb on - strand at 343.106 kb on - strand at 343.118 kb on - strand at 343.125 kb on + strand at 343.126 kb on - strand at 343.189 kb on - strand at 343.189 kb on - strand at 343.269 kb on + strand at 343.269 kb on + strand at 343.269 kb on + strand at 343.269 kb on + strand at 343.270 kb on - strand at 343.270 kb on - strand at 343.294 kb on + strand at 343.294 kb on + strand at 343.294 kb on + strand at 343.294 kb on + strand at 343.332 kb on + strand at 343.354 kb on + strand at 343.549 kb on + strand at 343.550 kb on - strand at 343.556 kb on + strand at 343.556 kb on + strand at 343.556 kb on + strand at 343.556 kb on + strand at 343.556 kb on + strand at 343.557 kb on - strand at 343.557 kb on - strand at 343.634 kb on + strand at 343.634 kb on + strand at 343.635 kb on - strand at 343.701 kb on - strand at 343.701 kb on - strand at 343.752 kb on - strand at 343.752 kb on - strand at 343.759 kb on + strand at 343.759 kb on + strand at 343.775 kb on - strand at 343.792 kb on + strand at 343.792 kb on + strand at 343.792 kb on + strand at 343.792 kb on + strand at 343.792 kb on + strand at 343.793 kb on - strand at 343.793 kb on - strand at 343.793 kb on - strand at 343.793 kb on - strand at 343.793 kb on - strand at 343.793 kb on - strand at 343.793 kb on - strand at 343.793 kb on - strand at 343.793 kb on - strand at 343.793 kb on - strand at 343.793 kb on - strand at 343.796 kb on + strand at 343.796 kb on + strand at 343.797 kb on - strand at 343.797 kb on - strand at 343.797 kb on - strand at 343.797 kb on - strand at 343.797 kb on - strand at 343.829 kb on + strand at 343.830 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction RCH2_defined remove 341,828 - -0.8 343,016 - -1.5 343,036 - +0.1 343,106 - +0.1 343,118 - +1.1 343,125 + -0.4 343,126 - -0.7 343,189 - -0.1 343,189 - +1.6 343,269 + -0.1 343,269 + -1.3 343,269 + +0.2 343,269 + +0.9 343,270 - -0.8 343,270 - +0.2 343,294 + -0.6 343,294 + +0.6 343,294 + +1.1 343,294 + -0.9 343,332 + -0.6 343,354 + +1.0 343,549 + -0.9 343,550 - -0.1 343,556 + +0.3 343,556 + -2.6 343,556 + +1.1 343,556 + -0.2 343,556 + -0.6 343,557 - +0.5 343,557 - -2.5 343,634 + +1.3 343,634 + -0.0 343,635 - -0.4 343,701 - -0.0 343,701 - +0.4 343,752 - +0.0 343,752 - -0.7 343,759 + +0.9 343,759 + +0.5 343,775 - -0.0 343,792 + +0.0 343,792 + -1.0 343,792 + -0.4 343,792 + -0.3 343,792 + +0.1 343,793 - -0.7 343,793 - +1.2 343,793 - -0.9 343,793 - +0.5 343,793 - -0.1 343,793 - -0.2 343,793 - -0.3 343,793 - -0.4 343,793 - +0.2 343,793 - -0.2 343,793 - +0.1 343,796 + -0.0 343,796 + -0.0 343,797 - +0.3 343,797 - +0.0 343,797 - +0.1 343,797 - -0.2 343,797 - -0.5 343,829 + -0.7 343,830 - +0.4
Or see this region's nucleotide sequence