Experiment: KB with Dimethyl Sulfoxide 1.25 vol%
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_4218 and Psyr_4219 are separated by 410 nucleotides Psyr_4219 and Psyr_4220 are separated by 13 nucleotides Psyr_4220 and Psyr_4221 are separated by 362 nucleotides
Psyr_4218: Psyr_4218 - Histidine kinase, HAMP region:Bacterial chemotaxis sensory transducer, at 5,023,714 to 5,025,339
_4218
Psyr_4219: Psyr_4219 - GAF, at 5,025,750 to 5,026,250
_4219
Psyr_4220: Psyr_4220 - GCN5-related N-acetyltransferase, at 5,026,264 to 5,026,719
_4220
Psyr_4221: Psyr_4221 - diguanylate cyclase/phosphodiesterase, at 5,027,082 to 5,028,905
_4221
Position (kb) 5025
5026
5027 Strain fitness (log2 ratio) -2
-1
0
1
2 at 5024.796 kb on + strand, within Psyr_4218 at 5024.797 kb on - strand, within Psyr_4218 at 5024.797 kb on - strand, within Psyr_4218 at 5024.797 kb on - strand, within Psyr_4218 at 5024.971 kb on - strand at 5024.971 kb on - strand, within Psyr_4218 at 5025.191 kb on + strand at 5025.191 kb on + strand at 5025.191 kb on + strand at 5025.192 kb on - strand at 5025.192 kb on - strand at 5025.337 kb on + strand at 5025.337 kb on + strand at 5025.337 kb on + strand at 5025.337 kb on + strand at 5025.337 kb on + strand at 5025.337 kb on + strand at 5025.337 kb on + strand at 5025.338 kb on - strand at 5025.338 kb on - strand at 5025.338 kb on - strand at 5025.338 kb on - strand at 5025.338 kb on - strand at 5025.338 kb on - strand at 5025.338 kb on - strand at 5025.403 kb on + strand at 5025.404 kb on - strand at 5025.404 kb on - strand at 5025.414 kb on + strand at 5025.414 kb on + strand at 5025.450 kb on - strand at 5025.524 kb on + strand at 5025.524 kb on + strand at 5025.524 kb on + strand at 5025.524 kb on + strand at 5025.525 kb on - strand at 5025.525 kb on - strand at 5025.534 kb on - strand at 5025.534 kb on - strand at 5025.534 kb on - strand at 5025.542 kb on + strand at 5025.542 kb on + strand at 5025.543 kb on - strand at 5025.551 kb on - strand at 5025.554 kb on + strand at 5025.554 kb on + strand at 5025.554 kb on + strand at 5025.554 kb on + strand at 5025.554 kb on + strand at 5025.567 kb on + strand at 5025.600 kb on + strand at 5025.600 kb on + strand at 5025.600 kb on + strand at 5025.601 kb on - strand at 5025.615 kb on - strand at 5025.615 kb on - strand at 5025.636 kb on + strand at 5025.636 kb on + strand at 5025.637 kb on - strand at 5025.637 kb on - strand at 5025.645 kb on + strand at 5025.645 kb on + strand at 5025.646 kb on - strand at 5025.646 kb on - strand at 5025.646 kb on - strand at 5025.646 kb on - strand at 5025.661 kb on - strand at 5025.817 kb on + strand, within Psyr_4219 at 5025.818 kb on - strand, within Psyr_4219 at 5025.869 kb on - strand, within Psyr_4219 at 5025.869 kb on - strand, within Psyr_4219 at 5025.900 kb on + strand, within Psyr_4219 at 5025.990 kb on - strand, within Psyr_4219 at 5025.994 kb on + strand, within Psyr_4219 at 5026.023 kb on + strand, within Psyr_4219 at 5026.024 kb on - strand, within Psyr_4219 at 5026.041 kb on - strand, within Psyr_4219 at 5026.043 kb on + strand, within Psyr_4219 at 5026.044 kb on - strand, within Psyr_4219 at 5026.044 kb on - strand, within Psyr_4219 at 5026.044 kb on - strand, within Psyr_4219 at 5026.044 kb on - strand, within Psyr_4219 at 5026.044 kb on - strand, within Psyr_4219 at 5026.065 kb on + strand, within Psyr_4219 at 5026.065 kb on + strand, within Psyr_4219 at 5026.065 kb on + strand, within Psyr_4219 at 5026.065 kb on + strand, within Psyr_4219 at 5026.065 kb on + strand, within Psyr_4219 at 5026.065 kb on + strand, within Psyr_4219 at 5026.065 kb on + strand, within Psyr_4219 at 5026.066 kb on - strand, within Psyr_4219 at 5026.066 kb on - strand, within Psyr_4219 at 5026.066 kb on - strand, within Psyr_4219 at 5026.066 kb on - strand, within Psyr_4219 at 5026.066 kb on - strand, within Psyr_4219 at 5026.066 kb on - strand, within Psyr_4219 at 5026.177 kb on + strand, within Psyr_4219 at 5026.177 kb on + strand, within Psyr_4219 at 5026.177 kb on + strand, within Psyr_4219 at 5026.177 kb on + strand, within Psyr_4219 at 5026.178 kb on - strand, within Psyr_4219 at 5026.206 kb on + strand at 5026.206 kb on + strand at 5026.207 kb on - strand at 5026.215 kb on + strand at 5026.249 kb on - strand at 5026.249 kb on - strand at 5026.296 kb on + strand at 5026.296 kb on + strand at 5026.296 kb on + strand at 5026.297 kb on - strand at 5026.297 kb on - strand at 5026.297 kb on - strand at 5026.297 kb on - strand at 5026.297 kb on - strand at 5026.297 kb on - strand at 5026.297 kb on - strand at 5026.350 kb on - strand, within Psyr_4220 at 5026.350 kb on - strand, within Psyr_4220 at 5026.378 kb on + strand, within Psyr_4220 at 5026.378 kb on + strand, within Psyr_4220 at 5026.379 kb on - strand, within Psyr_4220 at 5026.420 kb on + strand, within Psyr_4220 at 5026.420 kb on + strand, within Psyr_4220 at 5026.421 kb on - strand, within Psyr_4220 at 5026.421 kb on - strand, within Psyr_4220 at 5026.561 kb on + strand, within Psyr_4220 at 5026.561 kb on + strand, within Psyr_4220 at 5026.561 kb on + strand, within Psyr_4220 at 5026.561 kb on + strand, within Psyr_4220 at 5026.561 kb on + strand, within Psyr_4220 at 5026.562 kb on - strand, within Psyr_4220 at 5026.562 kb on - strand, within Psyr_4220 at 5026.613 kb on - strand, within Psyr_4220 at 5026.660 kb on + strand, within Psyr_4220 at 5026.713 kb on + strand at 5026.714 kb on - strand at 5026.744 kb on - strand at 5026.904 kb on + strand at 5026.909 kb on + strand at 5026.909 kb on + strand at 5026.913 kb on + strand at 5026.913 kb on + strand at 5026.914 kb on - strand at 5026.914 kb on - strand at 5026.953 kb on + strand at 5026.984 kb on + strand at 5026.984 kb on + strand at 5026.985 kb on - strand at 5026.985 kb on - strand at 5026.985 kb on - strand at 5027.026 kb on + strand at 5027.048 kb on + strand at 5027.049 kb on - strand at 5027.051 kb on - strand at 5027.051 kb on - strand at 5027.051 kb on - strand at 5027.064 kb on + strand at 5027.159 kb on + strand at 5027.160 kb on - strand at 5027.160 kb on - strand at 5027.173 kb on + strand at 5027.173 kb on + strand at 5027.173 kb on + strand at 5027.173 kb on + strand at 5027.173 kb on + strand at 5027.173 kb on + strand at 5027.173 kb on + strand at 5027.173 kb on + strand at 5027.174 kb on - strand at 5027.174 kb on - strand at 5027.174 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction KB with Dimethyl Sulfoxide 1.25 vol% remove 5,024,796 + Psyr_4218 0.67 +1.1 5,024,797 - Psyr_4218 0.67 -0.0 5,024,797 - Psyr_4218 0.67 -0.8 5,024,797 - Psyr_4218 0.67 -0.0 5,024,971 - +0.5 5,024,971 - Psyr_4218 0.77 +0.2 5,025,191 + +0.0 5,025,191 + +1.2 5,025,191 + -0.5 5,025,192 - +0.7 5,025,192 - -0.8 5,025,337 + -1.7 5,025,337 + +1.6 5,025,337 + +0.8 5,025,337 + -1.2 5,025,337 + +0.2 5,025,337 + -0.9 5,025,337 + -0.4 5,025,338 - +0.1 5,025,338 - +0.6 5,025,338 - +1.2 5,025,338 - -0.1 5,025,338 - -0.3 5,025,338 - -0.6 5,025,338 - +0.5 5,025,403 + -0.4 5,025,404 - +0.3 5,025,404 - -0.9 5,025,414 + +0.4 5,025,414 + +0.2 5,025,450 - +0.5 5,025,524 + -0.6 5,025,524 + -0.1 5,025,524 + +0.9 5,025,524 + +0.3 5,025,525 - +0.4 5,025,525 - +0.4 5,025,534 - +1.8 5,025,534 - -0.4 5,025,534 - +1.1 5,025,542 + -0.7 5,025,542 + -0.7 5,025,543 - +0.0 5,025,551 - +0.2 5,025,554 + -0.0 5,025,554 + -0.4 5,025,554 + -0.8 5,025,554 + +0.0 5,025,554 + -1.6 5,025,567 + +0.9 5,025,600 + -0.4 5,025,600 + -0.4 5,025,600 + -0.4 5,025,601 - +0.3 5,025,615 - -0.8 5,025,615 - +1.6 5,025,636 + -1.9 5,025,636 + +0.8 5,025,637 - -0.8 5,025,637 - +1.5 5,025,645 + +0.1 5,025,645 + +0.9 5,025,646 - +1.4 5,025,646 - -0.1 5,025,646 - -0.5 5,025,646 - +2.2 5,025,661 - +0.7 5,025,817 + Psyr_4219 0.13 +0.6 5,025,818 - Psyr_4219 0.14 -0.3 5,025,869 - Psyr_4219 0.24 +0.3 5,025,869 - Psyr_4219 0.24 -0.3 5,025,900 + Psyr_4219 0.30 +0.1 5,025,990 - Psyr_4219 0.48 -1.4 5,025,994 + Psyr_4219 0.49 +0.1 5,026,023 + Psyr_4219 0.54 -0.6 5,026,024 - Psyr_4219 0.55 -0.4 5,026,041 - Psyr_4219 0.58 +0.2 5,026,043 + Psyr_4219 0.58 -0.4 5,026,044 - Psyr_4219 0.59 +0.0 5,026,044 - Psyr_4219 0.59 +0.4 5,026,044 - Psyr_4219 0.59 -0.5 5,026,044 - Psyr_4219 0.59 -0.2 5,026,044 - Psyr_4219 0.59 +0.7 5,026,065 + Psyr_4219 0.63 -1.2 5,026,065 + Psyr_4219 0.63 +0.2 5,026,065 + Psyr_4219 0.63 -0.4 5,026,065 + Psyr_4219 0.63 -0.8 5,026,065 + Psyr_4219 0.63 -0.5 5,026,065 + Psyr_4219 0.63 -1.0 5,026,065 + Psyr_4219 0.63 +0.8 5,026,066 - Psyr_4219 0.63 -0.2 5,026,066 - Psyr_4219 0.63 -0.5 5,026,066 - Psyr_4219 0.63 +0.0 5,026,066 - Psyr_4219 0.63 +0.6 5,026,066 - Psyr_4219 0.63 -0.3 5,026,066 - Psyr_4219 0.63 -0.5 5,026,177 + Psyr_4219 0.85 -0.5 5,026,177 + Psyr_4219 0.85 -0.6 5,026,177 + Psyr_4219 0.85 -0.2 5,026,177 + Psyr_4219 0.85 -1.8 5,026,178 - Psyr_4219 0.85 -1.2 5,026,206 + -0.8 5,026,206 + +0.1 5,026,207 - +0.8 5,026,215 + -0.9 5,026,249 - +0.4 5,026,249 - +0.4 5,026,296 + -1.0 5,026,296 + +0.2 5,026,296 + -2.1 5,026,297 - +0.4 5,026,297 - +0.8 5,026,297 - -0.4 5,026,297 - -0.5 5,026,297 - +1.2 5,026,297 - +0.3 5,026,297 - +2.0 5,026,350 - Psyr_4220 0.19 +1.2 5,026,350 - Psyr_4220 0.19 +0.9 5,026,378 + Psyr_4220 0.25 +1.8 5,026,378 + Psyr_4220 0.25 -1.9 5,026,379 - Psyr_4220 0.25 -0.2 5,026,420 + Psyr_4220 0.34 -1.2 5,026,420 + Psyr_4220 0.34 +0.1 5,026,421 - Psyr_4220 0.34 -0.2 5,026,421 - Psyr_4220 0.34 +0.7 5,026,561 + Psyr_4220 0.65 +0.3 5,026,561 + Psyr_4220 0.65 +0.2 5,026,561 + Psyr_4220 0.65 +2.0 5,026,561 + Psyr_4220 0.65 -0.1 5,026,561 + Psyr_4220 0.65 -0.3 5,026,562 - Psyr_4220 0.65 -0.6 5,026,562 - Psyr_4220 0.65 -1.9 5,026,613 - Psyr_4220 0.77 -0.6 5,026,660 + Psyr_4220 0.87 -0.2 5,026,713 + +0.5 5,026,714 - +0.1 5,026,744 - -1.1 5,026,904 + -0.1 5,026,909 + +0.4 5,026,909 + +1.2 5,026,913 + +1.0 5,026,913 + +0.2 5,026,914 - +1.2 5,026,914 - -0.2 5,026,953 + -1.4 5,026,984 + -1.8 5,026,984 + +0.0 5,026,985 - -1.0 5,026,985 - -0.1 5,026,985 - -0.6 5,027,026 + +0.1 5,027,048 + -1.4 5,027,049 - +0.6 5,027,051 - -1.8 5,027,051 - +0.1 5,027,051 - -0.6 5,027,064 + -0.2 5,027,159 + +0.0 5,027,160 - +1.2 5,027,160 - +0.1 5,027,173 + +0.6 5,027,173 + +1.8 5,027,173 + +0.0 5,027,173 + -1.8 5,027,173 + -0.4 5,027,173 + -0.4 5,027,173 + -0.5 5,027,173 + +0.6 5,027,174 - -0.7 5,027,174 - -0.4 5,027,174 - -0.3
Or see this region's nucleotide sequence