Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_0448

Experiment: KB with Dimethyl Sulfoxide 1.25 vol%

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntPsyr_0446 and Psyr_0447 overlap by 7 nucleotidesPsyr_0447 and Psyr_0448 overlap by 4 nucleotidesPsyr_0448 and Psyr_0449 are separated by 69 nucleotidesPsyr_0449 and Psyr_0450 are separated by 1 nucleotides Psyr_0446: Psyr_0446 - Malonate decarboxylase gamma subunit, at 483,306 to 484,106 _0446 Psyr_0447: Psyr_0447 - malonate decarboxylase subunit, putative, at 484,100 to 484,741 _0447 Psyr_0448: Psyr_0448 - Acyl transferase region, at 484,738 to 485,673 _0448 Psyr_0449: Psyr_0449 - Malonate transporter MadL subunit, at 485,743 to 486,159 _0449 Psyr_0450: Psyr_0450 - Malonate/sodium symporter MadM subunit, at 486,161 to 486,925 _0450 Position (kb) 484 485 486Strain fitness (log2 ratio) -2 -1 0 1 2at 483.886 kb on - strandat 483.901 kb on - strand, within Psyr_0446at 484.012 kb on + strand, within Psyr_0446at 484.012 kb on + strand, within Psyr_0446at 484.012 kb on + strand, within Psyr_0446at 484.012 kb on + strand, within Psyr_0446at 484.013 kb on - strand, within Psyr_0446at 484.013 kb on - strand, within Psyr_0446at 484.298 kb on + strand, within Psyr_0447at 484.298 kb on + strand, within Psyr_0447at 484.309 kb on + strand, within Psyr_0447at 484.310 kb on - strand, within Psyr_0447at 484.978 kb on + strand, within Psyr_0448at 484.979 kb on - strand, within Psyr_0448at 484.979 kb on - strand, within Psyr_0448at 485.144 kb on + strand, within Psyr_0448at 485.144 kb on + strand, within Psyr_0448at 485.144 kb on + strand, within Psyr_0448at 485.144 kb on + strand, within Psyr_0448at 485.144 kb on + strand, within Psyr_0448at 485.145 kb on - strand, within Psyr_0448at 485.145 kb on - strand, within Psyr_0448at 485.145 kb on - strand, within Psyr_0448at 485.145 kb on - strand, within Psyr_0448at 485.145 kb on - strand, within Psyr_0448at 485.165 kb on + strand, within Psyr_0448at 485.165 kb on + strand, within Psyr_0448at 485.166 kb on - strand, within Psyr_0448at 485.166 kb on - strand, within Psyr_0448at 485.166 kb on - strand, within Psyr_0448at 485.166 kb on - strand, within Psyr_0448at 485.396 kb on + strand, within Psyr_0448at 485.396 kb on + strand, within Psyr_0448at 485.396 kb on + strand, within Psyr_0448at 485.396 kb on + strand, within Psyr_0448at 485.396 kb on + strand, within Psyr_0448at 485.397 kb on - strand, within Psyr_0448at 485.397 kb on - strand, within Psyr_0448at 485.401 kb on + strand, within Psyr_0448at 485.402 kb on - strand, within Psyr_0448at 485.692 kb on - strandat 485.692 kb on - strandat 485.748 kb on + strandat 485.752 kb on + strandat 485.752 kb on + strandat 485.752 kb on + strandat 485.753 kb on - strandat 485.766 kb on - strandat 485.953 kb on + strand, within Psyr_0449at 485.953 kb on + strand, within Psyr_0449at 485.953 kb on + strand, within Psyr_0449at 485.953 kb on + strand, within Psyr_0449at 485.953 kb on + strand, within Psyr_0449at 485.953 kb on + strand, within Psyr_0449at 485.954 kb on - strand, within Psyr_0449at 485.954 kb on - strand, within Psyr_0449at 485.954 kb on - strand, within Psyr_0449at 485.954 kb on - strand, within Psyr_0449at 486.160 kb on + strandat 486.160 kb on + strandat 486.160 kb on + strandat 486.160 kb on + strandat 486.161 kb on - strandat 486.161 kb on - strandat 486.161 kb on - strandat 486.499 kb on - strand, within Psyr_0450at 486.602 kb on + strand, within Psyr_0450at 486.602 kb on + strand, within Psyr_0450at 486.602 kb on + strand, within Psyr_0450at 486.602 kb on + strand, within Psyr_0450at 486.602 kb on + strand, within Psyr_0450at 486.602 kb on + strand, within Psyr_0450at 486.602 kb on + strand, within Psyr_0450at 486.602 kb on + strand, within Psyr_0450at 486.602 kb on + strand, within Psyr_0450at 486.602 kb on + strand, within Psyr_0450at 486.602 kb on + strand, within Psyr_0450at 486.602 kb on + strand, within Psyr_0450at 486.602 kb on + strand, within Psyr_0450at 486.602 kb on + strand, within Psyr_0450at 486.603 kb on - strand, within Psyr_0450at 486.603 kb on - strand, within Psyr_0450at 486.603 kb on - strand, within Psyr_0450at 486.603 kb on - strand, within Psyr_0450at 486.603 kb on - strand, within Psyr_0450at 486.603 kb on - strand, within Psyr_0450at 486.603 kb on - strand, within Psyr_0450at 486.603 kb on - strand, within Psyr_0450at 486.651 kb on + strand, within Psyr_0450at 486.651 kb on + strand, within Psyr_0450at 486.652 kb on - strand, within Psyr_0450at 486.652 kb on - strand, within Psyr_0450at 486.652 kb on - strand, within Psyr_0450at 486.652 kb on - strand, within Psyr_0450at 486.652 kb on - strand, within Psyr_0450at 486.652 kb on - strand, within Psyr_0450

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction KB with Dimethyl Sulfoxide 1.25 vol%
remove
483,886 - +0.3
483,901 - Psyr_0446 0.74 -0.4
484,012 + Psyr_0446 0.88 -1.1
484,012 + Psyr_0446 0.88 +0.4
484,012 + Psyr_0446 0.88 +0.9
484,012 + Psyr_0446 0.88 +0.2
484,013 - Psyr_0446 0.88 -1.2
484,013 - Psyr_0446 0.88 -0.0
484,298 + Psyr_0447 0.31 -0.5
484,298 + Psyr_0447 0.31 -0.9
484,309 + Psyr_0447 0.33 +0.4
484,310 - Psyr_0447 0.33 +0.2
484,978 + Psyr_0448 0.26 +0.4
484,979 - Psyr_0448 0.26 +0.4
484,979 - Psyr_0448 0.26 +1.5
485,144 + Psyr_0448 0.43 +1.0
485,144 + Psyr_0448 0.43 -0.4
485,144 + Psyr_0448 0.43 -0.0
485,144 + Psyr_0448 0.43 -1.1
485,144 + Psyr_0448 0.43 +0.1
485,145 - Psyr_0448 0.43 -1.7
485,145 - Psyr_0448 0.43 -0.3
485,145 - Psyr_0448 0.43 +1.5
485,145 - Psyr_0448 0.43 -0.5
485,145 - Psyr_0448 0.43 -0.4
485,165 + Psyr_0448 0.46 -0.3
485,165 + Psyr_0448 0.46 -0.0
485,166 - Psyr_0448 0.46 +0.1
485,166 - Psyr_0448 0.46 -1.8
485,166 - Psyr_0448 0.46 -0.9
485,166 - Psyr_0448 0.46 +0.1
485,396 + Psyr_0448 0.70 -0.5
485,396 + Psyr_0448 0.70 -0.0
485,396 + Psyr_0448 0.70 +0.1
485,396 + Psyr_0448 0.70 +1.6
485,396 + Psyr_0448 0.70 -0.8
485,397 - Psyr_0448 0.70 +0.1
485,397 - Psyr_0448 0.70 -0.7
485,401 + Psyr_0448 0.71 -1.3
485,402 - Psyr_0448 0.71 -0.4
485,692 - -0.3
485,692 - -0.2
485,748 + +0.3
485,752 + -0.4
485,752 + -0.7
485,752 + -0.4
485,753 - -0.4
485,766 - +0.3
485,953 + Psyr_0449 0.50 -0.6
485,953 + Psyr_0449 0.50 +0.2
485,953 + Psyr_0449 0.50 -0.2
485,953 + Psyr_0449 0.50 +1.6
485,953 + Psyr_0449 0.50 -1.0
485,953 + Psyr_0449 0.50 -0.6
485,954 - Psyr_0449 0.51 -1.0
485,954 - Psyr_0449 0.51 +0.4
485,954 - Psyr_0449 0.51 +0.5
485,954 - Psyr_0449 0.51 +0.3
486,160 + -0.0
486,160 + +0.4
486,160 + -0.0
486,160 + -0.4
486,161 - -1.0
486,161 - +0.3
486,161 - +0.6
486,499 - Psyr_0450 0.44 +0.2
486,602 + Psyr_0450 0.58 +0.2
486,602 + Psyr_0450 0.58 +0.3
486,602 + Psyr_0450 0.58 -1.9
486,602 + Psyr_0450 0.58 -0.5
486,602 + Psyr_0450 0.58 +0.8
486,602 + Psyr_0450 0.58 +0.4
486,602 + Psyr_0450 0.58 +0.9
486,602 + Psyr_0450 0.58 -0.2
486,602 + Psyr_0450 0.58 +1.0
486,602 + Psyr_0450 0.58 +0.0
486,602 + Psyr_0450 0.58 +0.5
486,602 + Psyr_0450 0.58 +1.0
486,602 + Psyr_0450 0.58 +0.4
486,602 + Psyr_0450 0.58 +0.1
486,603 - Psyr_0450 0.58 -0.4
486,603 - Psyr_0450 0.58 -0.5
486,603 - Psyr_0450 0.58 +1.0
486,603 - Psyr_0450 0.58 -0.3
486,603 - Psyr_0450 0.58 -1.5
486,603 - Psyr_0450 0.58 -0.4
486,603 - Psyr_0450 0.58 +0.3
486,603 - Psyr_0450 0.58 -0.9
486,651 + Psyr_0450 0.64 -0.8
486,651 + Psyr_0450 0.64 -0.2
486,652 - Psyr_0450 0.64 -0.2
486,652 - Psyr_0450 0.64 +1.7
486,652 - Psyr_0450 0.64 +1.9
486,652 - Psyr_0450 0.64 +0.5
486,652 - Psyr_0450 0.64 +1.4
486,652 - Psyr_0450 0.64 +1.6

Or see this region's nucleotide sequence