Experiment: D-Cycloserine 0.032 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psest_1288 and Psest_1289 are separated by 19 nucleotides Psest_1289 and Psest_1290 overlap by 4 nucleotides
Psest_1288: Psest_1288 - Putative multicopper oxidases, at 1,393,733 to 1,395,103
_1288
Psest_1289: Psest_1289 - Cytosine/adenosine deaminases, at 1,395,123 to 1,395,605
_1289
Psest_1290: Psest_1290 - ABC-type spermidine/putrescine transport systems, ATPase components, at 1,395,602 to 1,396,699
_1290
Position (kb)
1395
1396 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3
4 at 1394.400 kb on + strand, within Psest_1288 at 1394.401 kb on - strand, within Psest_1288 at 1394.417 kb on - strand, within Psest_1288 at 1394.417 kb on - strand, within Psest_1288 at 1394.462 kb on + strand, within Psest_1288 at 1394.462 kb on + strand, within Psest_1288 at 1394.462 kb on + strand, within Psest_1288 at 1394.463 kb on - strand, within Psest_1288 at 1394.463 kb on - strand, within Psest_1288 at 1394.463 kb on - strand, within Psest_1288 at 1394.765 kb on + strand, within Psest_1288 at 1394.765 kb on + strand, within Psest_1288 at 1394.765 kb on + strand, within Psest_1288 at 1394.766 kb on - strand, within Psest_1288 at 1394.767 kb on + strand, within Psest_1288 at 1394.768 kb on - strand, within Psest_1288 at 1394.768 kb on - strand, within Psest_1288 at 1394.768 kb on - strand, within Psest_1288 at 1394.858 kb on + strand, within Psest_1288 at 1394.858 kb on + strand, within Psest_1288 at 1394.858 kb on - strand, within Psest_1288 at 1394.859 kb on - strand, within Psest_1288 at 1394.859 kb on - strand, within Psest_1288 at 1394.859 kb on - strand, within Psest_1288 at 1394.859 kb on - strand, within Psest_1288 at 1394.859 kb on - strand, within Psest_1288 at 1394.859 kb on - strand, within Psest_1288 at 1394.859 kb on - strand, within Psest_1288 at 1394.859 kb on - strand, within Psest_1288 at 1394.975 kb on + strand at 1394.975 kb on + strand at 1394.975 kb on + strand at 1394.976 kb on - strand at 1394.976 kb on - strand at 1394.976 kb on - strand at 1394.976 kb on - strand at 1394.976 kb on - strand at 1394.976 kb on - strand at 1394.976 kb on - strand at 1395.065 kb on - strand at 1395.099 kb on + strand at 1395.100 kb on - strand at 1395.100 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction D-Cycloserine 0.032 mg/ml remove 1,394,400 + Psest_1288 0.49 -0.0 1,394,401 - Psest_1288 0.49 +0.4 1,394,417 - Psest_1288 0.50 +3.2 1,394,417 - Psest_1288 0.50 +0.8 1,394,462 + Psest_1288 0.53 -0.9 1,394,462 + Psest_1288 0.53 -1.1 1,394,462 + Psest_1288 0.53 -0.1 1,394,463 - Psest_1288 0.53 -2.0 1,394,463 - Psest_1288 0.53 +1.8 1,394,463 - Psest_1288 0.53 +0.6 1,394,765 + Psest_1288 0.75 -2.3 1,394,765 + Psest_1288 0.75 +1.6 1,394,765 + Psest_1288 0.75 +1.4 1,394,766 - Psest_1288 0.75 -1.9 1,394,767 + Psest_1288 0.75 -2.8 1,394,768 - Psest_1288 0.75 -1.4 1,394,768 - Psest_1288 0.75 -0.6 1,394,768 - Psest_1288 0.75 +3.9 1,394,858 + Psest_1288 0.82 +0.2 1,394,858 + Psest_1288 0.82 -0.7 1,394,858 - Psest_1288 0.82 +1.7 1,394,859 - Psest_1288 0.82 +0.4 1,394,859 - Psest_1288 0.82 +2.3 1,394,859 - Psest_1288 0.82 +2.3 1,394,859 - Psest_1288 0.82 -0.3 1,394,859 - Psest_1288 0.82 +1.8 1,394,859 - Psest_1288 0.82 -0.4 1,394,859 - Psest_1288 0.82 +0.1 1,394,859 - Psest_1288 0.82 +0.5 1,394,975 + -0.6 1,394,975 + +0.7 1,394,975 + -0.3 1,394,976 - -3.3 1,394,976 - -1.0 1,394,976 - -2.3 1,394,976 - -2.3 1,394,976 - -2.2 1,394,976 - -0.6 1,394,976 - +2.5 1,395,065 - -1.2 1,395,099 + +1.1 1,395,100 - +0.7 1,395,100 - -0.1
Or see this region's nucleotide sequence