Experiment: Phosphomycin 0.012 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psest_3056 and Psest_3057 are separated by 150 nucleotides Psest_3057 and Psest_3058 are separated by 10 nucleotides Psest_3058 and Psest_3059 overlap by 4 nucleotides Psest_3059 and Psest_3060 are separated by 15 nucleotides Psest_3060 and Psest_3061 are separated by 292 nucleotides
Psest_3056: Psest_3056 - hypothetical protein, at 3,237,229 to 3,238,722
_3056
Psest_3057: Psest_3057 - Bacteriophage coat protein B., at 3,238,873 to 3,239,082
_3057
Psest_3058: Psest_3058 - hypothetical protein, at 3,239,093 to 3,239,308
_3058
Psest_3059: Psest_3059 - hypothetical protein, at 3,239,305 to 3,239,484
_3059
Psest_3060: Psest_3060 - hypothetical protein, at 3,239,500 to 3,239,859
_3060
Psest_3061: Psest_3061 - hypothetical protein, at 3,240,152 to 3,240,922
_3061
Position (kb)
3239
3240 Strain fitness (log2 ratio)
-2
-1
0
1
2
3 at 3238.148 kb on + strand, within Psest_3056 at 3238.314 kb on - strand, within Psest_3056 at 3238.314 kb on - strand, within Psest_3056 at 3238.314 kb on - strand, within Psest_3056 at 3238.506 kb on + strand, within Psest_3056 at 3238.594 kb on - strand at 3238.780 kb on + strand at 3238.780 kb on + strand at 3238.780 kb on + strand at 3238.789 kb on + strand at 3238.865 kb on + strand at 3238.893 kb on - strand at 3238.893 kb on - strand at 3238.893 kb on - strand at 3238.893 kb on - strand at 3238.893 kb on - strand at 3238.893 kb on - strand at 3238.893 kb on - strand at 3239.501 kb on + strand at 3239.692 kb on + strand, within Psest_3060 at 3239.692 kb on + strand, within Psest_3060 at 3239.693 kb on - strand, within Psest_3060 at 3239.693 kb on - strand, within Psest_3060 at 3239.705 kb on - strand, within Psest_3060 at 3239.790 kb on - strand, within Psest_3060 at 3239.790 kb on - strand, within Psest_3060 at 3239.963 kb on + strand at 3239.983 kb on + strand at 3239.983 kb on + strand at 3239.983 kb on + strand at 3239.983 kb on + strand at 3239.991 kb on + strand at 3240.014 kb on + strand at 3240.129 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Phosphomycin 0.012 mg/ml remove 3,238,148 + Psest_3056 0.62 -1.6 3,238,314 - Psest_3056 0.73 +0.4 3,238,314 - Psest_3056 0.73 -1.2 3,238,314 - Psest_3056 0.73 -1.1 3,238,506 + Psest_3056 0.85 +1.5 3,238,594 - -0.5 3,238,780 + -1.0 3,238,780 + +0.7 3,238,780 + +0.4 3,238,789 + +0.4 3,238,865 + -1.9 3,238,893 - -1.5 3,238,893 - -1.7 3,238,893 - -0.5 3,238,893 - -1.5 3,238,893 - +2.2 3,238,893 - -0.9 3,238,893 - -1.7 3,239,501 + +1.2 3,239,692 + Psest_3060 0.53 -0.3 3,239,692 + Psest_3060 0.53 +1.9 3,239,693 - Psest_3060 0.54 +0.3 3,239,693 - Psest_3060 0.54 +3.1 3,239,705 - Psest_3060 0.57 -0.2 3,239,790 - Psest_3060 0.81 -1.4 3,239,790 - Psest_3060 0.81 +1.7 3,239,963 + +1.0 3,239,983 + +1.1 3,239,983 + +0.3 3,239,983 + +0.8 3,239,983 + +0.3 3,239,991 + +1.0 3,240,014 + +0.4 3,240,129 + -0.4
Or see this region's nucleotide sequence