Experiment: Ying_AminoAcid20 rep B; time point 2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt IAI47_20890 and IAI47_20895 are separated by 619 nucleotides IAI47_20895 and IAI47_20900 are separated by 266 nucleotides
IAI47_20890: IAI47_20890 - hypothetical protein, at 422,985 to 423,758
_20890
IAI47_20895: IAI47_20895 - LacI family DNA-binding transcriptional regulator, at 424,378 to 425,448
_20895
IAI47_20900: IAI47_20900 - maltoporin, at 425,715 to 426,977
_20900
Position (kb) 424
425
426 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 423.419 kb on + strand, within IAI47_20890 at 423.419 kb on + strand, within IAI47_20890 at 423.419 kb on + strand, within IAI47_20890 at 423.419 kb on + strand, within IAI47_20890 at 423.419 kb on + strand, within IAI47_20890 at 423.420 kb on - strand, within IAI47_20890 at 423.420 kb on - strand, within IAI47_20890 at 423.420 kb on - strand, within IAI47_20890 at 423.422 kb on - strand, within IAI47_20890 at 423.521 kb on + strand, within IAI47_20890 at 423.521 kb on + strand, within IAI47_20890 at 423.522 kb on - strand, within IAI47_20890 at 423.522 kb on - strand, within IAI47_20890 at 423.524 kb on + strand, within IAI47_20890 at 423.524 kb on + strand, within IAI47_20890 at 423.525 kb on - strand, within IAI47_20890 at 423.525 kb on - strand, within IAI47_20890 at 423.545 kb on + strand, within IAI47_20890 at 423.585 kb on - strand, within IAI47_20890 at 423.585 kb on - strand, within IAI47_20890 at 423.601 kb on + strand, within IAI47_20890 at 423.601 kb on + strand, within IAI47_20890 at 423.601 kb on + strand, within IAI47_20890 at 423.601 kb on + strand, within IAI47_20890 at 423.698 kb on + strand at 423.698 kb on + strand at 423.699 kb on - strand at 423.699 kb on - strand at 423.699 kb on - strand at 423.707 kb on + strand at 423.707 kb on + strand at 423.708 kb on - strand at 423.708 kb on - strand at 423.708 kb on - strand at 423.708 kb on - strand at 423.708 kb on - strand at 423.715 kb on + strand at 423.716 kb on - strand at 423.716 kb on - strand at 423.772 kb on + strand at 423.773 kb on - strand at 423.778 kb on + strand at 423.778 kb on + strand at 423.779 kb on - strand at 423.793 kb on + strand at 423.793 kb on + strand at 423.793 kb on + strand at 423.793 kb on + strand at 423.830 kb on + strand at 423.832 kb on + strand at 423.833 kb on - strand at 423.833 kb on - strand at 423.890 kb on + strand at 423.890 kb on + strand at 423.890 kb on + strand at 423.890 kb on + strand at 423.891 kb on - strand at 423.891 kb on - strand at 423.891 kb on - strand at 423.891 kb on - strand at 423.891 kb on - strand at 423.891 kb on - strand at 423.891 kb on - strand at 423.893 kb on + strand at 423.893 kb on + strand at 423.893 kb on + strand at 423.893 kb on + strand at 423.893 kb on + strand at 423.893 kb on + strand at 423.893 kb on + strand at 423.893 kb on + strand at 423.893 kb on + strand at 423.894 kb on - strand at 423.894 kb on - strand at 423.894 kb on - strand at 423.894 kb on - strand at 423.894 kb on - strand at 423.894 kb on - strand at 423.969 kb on - strand at 424.005 kb on - strand at 424.005 kb on - strand at 424.017 kb on + strand at 424.017 kb on + strand at 424.017 kb on + strand at 424.045 kb on + strand at 424.045 kb on + strand at 424.045 kb on + strand at 424.046 kb on - strand at 424.046 kb on - strand at 424.046 kb on - strand at 424.046 kb on - strand at 424.048 kb on + strand at 424.048 kb on + strand at 424.048 kb on + strand at 424.048 kb on + strand at 424.048 kb on + strand at 424.048 kb on + strand at 424.048 kb on + strand at 424.049 kb on - strand at 424.049 kb on - strand at 424.049 kb on - strand at 424.049 kb on - strand at 424.049 kb on - strand at 424.049 kb on - strand at 424.049 kb on - strand at 424.049 kb on - strand at 424.049 kb on - strand at 424.073 kb on + strand at 424.073 kb on + strand at 424.149 kb on + strand at 424.149 kb on + strand at 424.168 kb on + strand at 424.168 kb on + strand at 424.169 kb on - strand at 424.169 kb on - strand at 424.193 kb on + strand at 424.193 kb on + strand at 424.193 kb on + strand at 424.193 kb on + strand at 424.193 kb on + strand at 424.193 kb on + strand at 424.193 kb on + strand at 424.194 kb on - strand at 424.194 kb on - strand at 424.194 kb on - strand at 424.283 kb on - strand at 424.311 kb on + strand at 424.312 kb on - strand at 424.312 kb on - strand at 424.315 kb on + strand at 424.331 kb on + strand at 424.331 kb on + strand at 424.331 kb on + strand at 424.332 kb on - strand at 424.358 kb on + strand at 424.359 kb on - strand at 424.526 kb on - strand, within IAI47_20895 at 424.552 kb on - strand, within IAI47_20895 at 424.613 kb on + strand, within IAI47_20895 at 424.613 kb on + strand, within IAI47_20895 at 424.613 kb on + strand, within IAI47_20895 at 424.613 kb on + strand, within IAI47_20895 at 424.613 kb on + strand, within IAI47_20895 at 424.613 kb on + strand, within IAI47_20895 at 424.613 kb on + strand, within IAI47_20895 at 424.613 kb on + strand, within IAI47_20895 at 424.614 kb on - strand, within IAI47_20895 at 424.614 kb on - strand, within IAI47_20895 at 424.614 kb on - strand, within IAI47_20895 at 424.614 kb on - strand, within IAI47_20895 at 424.756 kb on + strand, within IAI47_20895 at 424.756 kb on + strand, within IAI47_20895 at 424.756 kb on + strand, within IAI47_20895 at 424.757 kb on - strand, within IAI47_20895 at 424.757 kb on - strand, within IAI47_20895 at 424.766 kb on + strand, within IAI47_20895 at 424.766 kb on + strand, within IAI47_20895 at 424.766 kb on + strand, within IAI47_20895 at 424.767 kb on - strand, within IAI47_20895 at 424.821 kb on - strand, within IAI47_20895 at 424.833 kb on + strand, within IAI47_20895 at 424.919 kb on + strand, within IAI47_20895 at 424.919 kb on + strand, within IAI47_20895 at 424.919 kb on + strand, within IAI47_20895 at 424.920 kb on - strand, within IAI47_20895 at 424.920 kb on - strand, within IAI47_20895 at 424.925 kb on + strand, within IAI47_20895 at 424.926 kb on - strand, within IAI47_20895 at 424.926 kb on - strand, within IAI47_20895 at 424.926 kb on - strand, within IAI47_20895 at 424.926 kb on - strand, within IAI47_20895 at 424.985 kb on + strand, within IAI47_20895 at 424.986 kb on - strand, within IAI47_20895 at 425.014 kb on + strand, within IAI47_20895 at 425.014 kb on + strand, within IAI47_20895 at 425.014 kb on + strand, within IAI47_20895 at 425.014 kb on + strand, within IAI47_20895 at 425.014 kb on + strand, within IAI47_20895 at 425.014 kb on + strand, within IAI47_20895 at 425.015 kb on - strand, within IAI47_20895 at 425.015 kb on - strand, within IAI47_20895 at 425.015 kb on - strand, within IAI47_20895 at 425.015 kb on - strand, within IAI47_20895 at 425.015 kb on - strand, within IAI47_20895 at 425.015 kb on - strand, within IAI47_20895 at 425.082 kb on + strand, within IAI47_20895 at 425.112 kb on + strand, within IAI47_20895 at 425.112 kb on + strand, within IAI47_20895 at 425.161 kb on + strand, within IAI47_20895 at 425.295 kb on + strand, within IAI47_20895 at 425.296 kb on - strand, within IAI47_20895 at 425.303 kb on + strand, within IAI47_20895 at 425.304 kb on - strand, within IAI47_20895 at 425.304 kb on - strand, within IAI47_20895 at 425.368 kb on - strand at 425.368 kb on - strand at 425.393 kb on + strand at 425.394 kb on - strand at 425.394 kb on - strand at 425.394 kb on - strand at 425.426 kb on - strand at 425.449 kb on - strand at 425.482 kb on + strand at 425.482 kb on + strand at 425.482 kb on + strand at 425.482 kb on + strand at 425.483 kb on - strand at 425.483 kb on - strand at 425.483 kb on - strand at 425.615 kb on + strand at 425.615 kb on + strand at 425.615 kb on + strand at 425.615 kb on + strand at 425.615 kb on + strand at 425.615 kb on + strand at 425.615 kb on + strand at 425.616 kb on - strand at 425.616 kb on - strand at 425.616 kb on - strand at 425.616 kb on - strand at 425.616 kb on - strand at 425.701 kb on + strand at 425.728 kb on + strand at 425.728 kb on + strand at 425.728 kb on + strand at 425.728 kb on + strand at 425.728 kb on + strand at 425.729 kb on - strand at 425.729 kb on - strand at 425.729 kb on - strand at 425.732 kb on + strand at 425.732 kb on + strand at 425.733 kb on - strand at 425.778 kb on + strand at 425.778 kb on + strand at 425.778 kb on + strand at 425.778 kb on + strand at 425.779 kb on - strand at 425.779 kb on - strand at 425.779 kb on - strand at 425.779 kb on - strand at 425.811 kb on + strand at 425.812 kb on - strand at 425.859 kb on + strand, within IAI47_20900 at 425.904 kb on + strand, within IAI47_20900 at 425.904 kb on + strand, within IAI47_20900 at 425.905 kb on - strand, within IAI47_20900 at 425.935 kb on - strand, within IAI47_20900 at 425.958 kb on + strand, within IAI47_20900 at 425.958 kb on + strand, within IAI47_20900 at 425.958 kb on + strand, within IAI47_20900 at 425.958 kb on + strand, within IAI47_20900 at 426.061 kb on + strand, within IAI47_20900 at 426.062 kb on - strand, within IAI47_20900 at 426.114 kb on + strand, within IAI47_20900 at 426.115 kb on - strand, within IAI47_20900 at 426.117 kb on + strand, within IAI47_20900 at 426.117 kb on + strand, within IAI47_20900 at 426.117 kb on + strand, within IAI47_20900 at 426.117 kb on + strand, within IAI47_20900 at 426.118 kb on - strand, within IAI47_20900 at 426.118 kb on - strand, within IAI47_20900 at 426.118 kb on - strand, within IAI47_20900 at 426.118 kb on - strand, within IAI47_20900 at 426.146 kb on + strand, within IAI47_20900 at 426.153 kb on + strand, within IAI47_20900 at 426.153 kb on + strand, within IAI47_20900 at 426.154 kb on - strand, within IAI47_20900 at 426.161 kb on + strand, within IAI47_20900 at 426.192 kb on + strand, within IAI47_20900 at 426.193 kb on - strand, within IAI47_20900 at 426.287 kb on + strand, within IAI47_20900 at 426.287 kb on + strand, within IAI47_20900 at 426.287 kb on + strand, within IAI47_20900 at 426.287 kb on + strand, within IAI47_20900 at 426.287 kb on + strand, within IAI47_20900 at 426.287 kb on + strand, within IAI47_20900 at 426.288 kb on - strand, within IAI47_20900 at 426.288 kb on - strand, within IAI47_20900 at 426.288 kb on - strand, within IAI47_20900 at 426.288 kb on - strand, within IAI47_20900 at 426.288 kb on - strand, within IAI47_20900 at 426.288 kb on - strand, within IAI47_20900 at 426.288 kb on - strand, within IAI47_20900 at 426.291 kb on + strand, within IAI47_20900 at 426.291 kb on + strand, within IAI47_20900 at 426.292 kb on - strand, within IAI47_20900 at 426.292 kb on - strand, within IAI47_20900 at 426.292 kb on - strand, within IAI47_20900 at 426.306 kb on + strand, within IAI47_20900 at 426.357 kb on + strand, within IAI47_20900 at 426.358 kb on - strand, within IAI47_20900 at 426.358 kb on - strand, within IAI47_20900 at 426.393 kb on + strand, within IAI47_20900 at 426.393 kb on + strand, within IAI47_20900 at 426.394 kb on - strand, within IAI47_20900 at 426.394 kb on - strand, within IAI47_20900 at 426.405 kb on + strand, within IAI47_20900 at 426.406 kb on - strand, within IAI47_20900 at 426.406 kb on - strand, within IAI47_20900 at 426.425 kb on + strand, within IAI47_20900 at 426.426 kb on - strand, within IAI47_20900
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_AminoAcid20 rep B; time point 2 remove 423,419 + IAI47_20890 0.56 -0.5 423,419 + IAI47_20890 0.56 +0.1 423,419 + IAI47_20890 0.56 +1.8 423,419 + IAI47_20890 0.56 +0.8 423,419 + IAI47_20890 0.56 -1.1 423,420 - IAI47_20890 0.56 +0.1 423,420 - IAI47_20890 0.56 +0.0 423,420 - IAI47_20890 0.56 +0.2 423,422 - IAI47_20890 0.56 -0.6 423,521 + IAI47_20890 0.69 +2.0 423,521 + IAI47_20890 0.69 +0.3 423,522 - IAI47_20890 0.69 -0.2 423,522 - IAI47_20890 0.69 -1.2 423,524 + IAI47_20890 0.70 -0.8 423,524 + IAI47_20890 0.70 +0.2 423,525 - IAI47_20890 0.70 -0.3 423,525 - IAI47_20890 0.70 +0.5 423,545 + IAI47_20890 0.72 -0.2 423,585 - IAI47_20890 0.78 -1.2 423,585 - IAI47_20890 0.78 -0.6 423,601 + IAI47_20890 0.80 +0.7 423,601 + IAI47_20890 0.80 -1.1 423,601 + IAI47_20890 0.80 -0.5 423,601 + IAI47_20890 0.80 +0.3 423,698 + +2.4 423,698 + -0.8 423,699 - +1.1 423,699 - +0.1 423,699 - -0.6 423,707 + +0.8 423,707 + +0.5 423,708 - +0.1 423,708 - -1.0 423,708 - +0.8 423,708 - -1.0 423,708 - -1.4 423,715 + -1.2 423,716 - -0.2 423,716 - +0.8 423,772 + -0.2 423,773 - -0.6 423,778 + -1.4 423,778 + -0.2 423,779 - -0.2 423,793 + -0.2 423,793 + -0.0 423,793 + +0.8 423,793 + -1.5 423,830 + -1.5 423,832 + -0.0 423,833 - -0.1 423,833 - -0.2 423,890 + -1.0 423,890 + +2.8 423,890 + +0.8 423,890 + -0.5 423,891 - +1.5 423,891 - +1.5 423,891 - +0.0 423,891 - -0.6 423,891 - -0.4 423,891 - -1.3 423,891 - +0.2 423,893 + +1.8 423,893 + +0.9 423,893 + +0.1 423,893 + +0.5 423,893 + +0.8 423,893 + +1.0 423,893 + +0.4 423,893 + +0.4 423,893 + +0.4 423,894 - +0.7 423,894 - +0.1 423,894 - -1.2 423,894 - +0.0 423,894 - -1.3 423,894 - +0.1 423,969 - -1.0 424,005 - +0.3 424,005 - -0.7 424,017 + -0.0 424,017 + +0.0 424,017 + +0.2 424,045 + +0.4 424,045 + -0.2 424,045 + +1.2 424,046 - -1.3 424,046 - +0.2 424,046 - +1.3 424,046 - +0.2 424,048 + +0.1 424,048 + +1.1 424,048 + -1.0 424,048 + +0.9 424,048 + -0.8 424,048 + +0.0 424,048 + -0.2 424,049 - -1.1 424,049 - -0.4 424,049 - +0.4 424,049 - -1.5 424,049 - +2.1 424,049 - +0.3 424,049 - -1.6 424,049 - -1.4 424,049 - +0.2 424,073 + +0.5 424,073 + -0.5 424,149 + +0.6 424,149 + +0.5 424,168 + +0.7 424,168 + -0.6 424,169 - -0.5 424,169 - +0.3 424,193 + -0.1 424,193 + -0.4 424,193 + -0.2 424,193 + +1.7 424,193 + -1.8 424,193 + -2.0 424,193 + +1.8 424,194 - +0.6 424,194 - -1.5 424,194 - +0.9 424,283 - +0.8 424,311 + -0.2 424,312 - +0.1 424,312 - +0.1 424,315 + -2.5 424,331 + +0.3 424,331 + +0.0 424,331 + +0.8 424,332 - +0.8 424,358 + -0.9 424,359 - +0.5 424,526 - IAI47_20895 0.14 -1.5 424,552 - IAI47_20895 0.16 -0.5 424,613 + IAI47_20895 0.22 -0.4 424,613 + IAI47_20895 0.22 -0.5 424,613 + IAI47_20895 0.22 +0.8 424,613 + IAI47_20895 0.22 -1.2 424,613 + IAI47_20895 0.22 -1.4 424,613 + IAI47_20895 0.22 -2.2 424,613 + IAI47_20895 0.22 -0.8 424,613 + IAI47_20895 0.22 -1.8 424,614 - IAI47_20895 0.22 -1.4 424,614 - IAI47_20895 0.22 -2.4 424,614 - IAI47_20895 0.22 +2.8 424,614 - IAI47_20895 0.22 -0.5 424,756 + IAI47_20895 0.35 +1.4 424,756 + IAI47_20895 0.35 -0.6 424,756 + IAI47_20895 0.35 -2.7 424,757 - IAI47_20895 0.35 +0.2 424,757 - IAI47_20895 0.35 -0.2 424,766 + IAI47_20895 0.36 -0.2 424,766 + IAI47_20895 0.36 -1.3 424,766 + IAI47_20895 0.36 +1.2 424,767 - IAI47_20895 0.36 -0.9 424,821 - IAI47_20895 0.41 -1.0 424,833 + IAI47_20895 0.42 -1.2 424,919 + IAI47_20895 0.51 +1.1 424,919 + IAI47_20895 0.51 -3.3 424,919 + IAI47_20895 0.51 -0.5 424,920 - IAI47_20895 0.51 -1.5 424,920 - IAI47_20895 0.51 -1.5 424,925 + IAI47_20895 0.51 -0.9 424,926 - IAI47_20895 0.51 -0.2 424,926 - IAI47_20895 0.51 -1.7 424,926 - IAI47_20895 0.51 -0.6 424,926 - IAI47_20895 0.51 -0.5 424,985 + IAI47_20895 0.57 +0.2 424,986 - IAI47_20895 0.57 -0.3 425,014 + IAI47_20895 0.59 -0.4 425,014 + IAI47_20895 0.59 -1.1 425,014 + IAI47_20895 0.59 +0.1 425,014 + IAI47_20895 0.59 -1.2 425,014 + IAI47_20895 0.59 -1.2 425,014 + IAI47_20895 0.59 -0.9 425,015 - IAI47_20895 0.59 -0.5 425,015 - IAI47_20895 0.59 -0.3 425,015 - IAI47_20895 0.59 -1.5 425,015 - IAI47_20895 0.59 -1.8 425,015 - IAI47_20895 0.59 +0.4 425,015 - IAI47_20895 0.59 +0.0 425,082 + IAI47_20895 0.66 -0.4 425,112 + IAI47_20895 0.69 +0.2 425,112 + IAI47_20895 0.69 -1.1 425,161 + IAI47_20895 0.73 +0.0 425,295 + IAI47_20895 0.86 -1.7 425,296 - IAI47_20895 0.86 +0.2 425,303 + IAI47_20895 0.86 +0.1 425,304 - IAI47_20895 0.86 -1.6 425,304 - IAI47_20895 0.86 -1.3 425,368 - -1.5 425,368 - +0.5 425,393 + -0.3 425,394 - -1.3 425,394 - -1.2 425,394 - -0.6 425,426 - -0.5 425,449 - -0.0 425,482 + -0.2 425,482 + -0.9 425,482 + -0.9 425,482 + +0.4 425,483 - -2.0 425,483 - +0.8 425,483 - -0.2 425,615 + -2.5 425,615 + -1.5 425,615 + +1.0 425,615 + -1.2 425,615 + +0.2 425,615 + -0.4 425,615 + -0.4 425,616 - +0.7 425,616 - -1.5 425,616 - -0.8 425,616 - +0.2 425,616 - -0.2 425,701 + -0.1 425,728 + +0.8 425,728 + +0.3 425,728 + -0.7 425,728 + +1.1 425,728 + +0.5 425,729 - +0.5 425,729 - -1.8 425,729 - +0.6 425,732 + +0.8 425,732 + -0.2 425,733 - +1.5 425,778 + -0.1 425,778 + +1.4 425,778 + +0.4 425,778 + +0.5 425,779 - -0.4 425,779 - +0.4 425,779 - -0.3 425,779 - -0.1 425,811 + +0.8 425,812 - +2.1 425,859 + IAI47_20900 0.11 -1.2 425,904 + IAI47_20900 0.15 +0.3 425,904 + IAI47_20900 0.15 -0.3 425,905 - IAI47_20900 0.15 -0.4 425,935 - IAI47_20900 0.17 -0.6 425,958 + IAI47_20900 0.19 +0.4 425,958 + IAI47_20900 0.19 -0.0 425,958 + IAI47_20900 0.19 -1.2 425,958 + IAI47_20900 0.19 +1.0 426,061 + IAI47_20900 0.27 -0.6 426,062 - IAI47_20900 0.27 +1.5 426,114 + IAI47_20900 0.32 +0.6 426,115 - IAI47_20900 0.32 +0.4 426,117 + IAI47_20900 0.32 -0.0 426,117 + IAI47_20900 0.32 +1.3 426,117 + IAI47_20900 0.32 +0.8 426,117 + IAI47_20900 0.32 -1.2 426,118 - IAI47_20900 0.32 -1.0 426,118 - IAI47_20900 0.32 -0.7 426,118 - IAI47_20900 0.32 -1.2 426,118 - IAI47_20900 0.32 +0.8 426,146 + IAI47_20900 0.34 -0.1 426,153 + IAI47_20900 0.35 +0.2 426,153 + IAI47_20900 0.35 -0.6 426,154 - IAI47_20900 0.35 -0.2 426,161 + IAI47_20900 0.35 +0.1 426,192 + IAI47_20900 0.38 -0.3 426,193 - IAI47_20900 0.38 +0.7 426,287 + IAI47_20900 0.45 +0.7 426,287 + IAI47_20900 0.45 -1.5 426,287 + IAI47_20900 0.45 -0.0 426,287 + IAI47_20900 0.45 +0.8 426,287 + IAI47_20900 0.45 +0.8 426,287 + IAI47_20900 0.45 -0.2 426,288 - IAI47_20900 0.45 +0.5 426,288 - IAI47_20900 0.45 -0.9 426,288 - IAI47_20900 0.45 +1.4 426,288 - IAI47_20900 0.45 +0.8 426,288 - IAI47_20900 0.45 +1.8 426,288 - IAI47_20900 0.45 +1.0 426,288 - IAI47_20900 0.45 +1.2 426,291 + IAI47_20900 0.46 -0.1 426,291 + IAI47_20900 0.46 +1.0 426,292 - IAI47_20900 0.46 +0.3 426,292 - IAI47_20900 0.46 -0.8 426,292 - IAI47_20900 0.46 +1.1 426,306 + IAI47_20900 0.47 +0.8 426,357 + IAI47_20900 0.51 +1.2 426,358 - IAI47_20900 0.51 +0.8 426,358 - IAI47_20900 0.51 +0.4 426,393 + IAI47_20900 0.54 -0.2 426,393 + IAI47_20900 0.54 +0.8 426,394 - IAI47_20900 0.54 -1.7 426,394 - IAI47_20900 0.54 -0.8 426,405 + IAI47_20900 0.55 +0.1 426,406 - IAI47_20900 0.55 -0.6 426,406 - IAI47_20900 0.55 -1.7 426,425 + IAI47_20900 0.56 +1.1 426,426 - IAI47_20900 0.56 +0.8
Or see this region's nucleotide sequence