Strain Fitness in Enterobacter sp. TBS_079 around MPMX20_02250

Experiment: Parabanic Acid (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX20_02249 and MPMX20_02250 are separated by 203 nucleotidesMPMX20_02250 and MPMX20_02251 are separated by 24 nucleotides MPMX20_02249: MPMX20_02249 - hypothetical protein, at 2,360,930 to 2,362,033 _02249 MPMX20_02250: MPMX20_02250 - Aliphatic amidase expression-regulating protein, at 2,362,237 to 2,363,508 _02250 MPMX20_02251: MPMX20_02251 - hypothetical protein, at 2,363,533 to 2,365,107 _02251 Position (kb) 2362 2363 2364Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 2361.242 kb on + strand, within MPMX20_02249at 2361.430 kb on + strand, within MPMX20_02249at 2361.606 kb on - strand, within MPMX20_02249at 2361.611 kb on - strand, within MPMX20_02249at 2361.705 kb on + strand, within MPMX20_02249at 2361.934 kb on - strandat 2362.036 kb on - strandat 2362.047 kb on + strandat 2362.068 kb on + strandat 2362.071 kb on - strandat 2362.076 kb on - strandat 2362.081 kb on - strandat 2362.081 kb on - strandat 2362.157 kb on + strandat 2362.203 kb on + strandat 2362.203 kb on + strandat 2362.203 kb on + strandat 2362.203 kb on + strandat 2362.203 kb on + strandat 2362.211 kb on - strandat 2362.211 kb on - strandat 2362.290 kb on - strandat 2362.399 kb on - strand, within MPMX20_02250at 2362.458 kb on + strand, within MPMX20_02250at 2362.550 kb on + strand, within MPMX20_02250at 2362.556 kb on + strand, within MPMX20_02250at 2362.594 kb on - strand, within MPMX20_02250at 2362.611 kb on + strand, within MPMX20_02250at 2362.611 kb on + strand, within MPMX20_02250at 2362.619 kb on - strand, within MPMX20_02250at 2362.619 kb on - strand, within MPMX20_02250at 2362.626 kb on + strand, within MPMX20_02250at 2362.634 kb on - strand, within MPMX20_02250at 2362.634 kb on - strand, within MPMX20_02250at 2362.634 kb on - strand, within MPMX20_02250at 2362.634 kb on - strand, within MPMX20_02250at 2362.634 kb on - strand, within MPMX20_02250at 2362.641 kb on + strand, within MPMX20_02250at 2362.646 kb on + strand, within MPMX20_02250at 2362.720 kb on + strand, within MPMX20_02250at 2362.728 kb on - strand, within MPMX20_02250at 2362.842 kb on + strand, within MPMX20_02250at 2362.842 kb on + strand, within MPMX20_02250at 2362.850 kb on - strand, within MPMX20_02250at 2362.850 kb on - strand, within MPMX20_02250at 2362.850 kb on - strand, within MPMX20_02250at 2362.887 kb on - strand, within MPMX20_02250at 2362.914 kb on - strand, within MPMX20_02250at 2363.016 kb on - strand, within MPMX20_02250at 2363.040 kb on + strand, within MPMX20_02250at 2363.059 kb on - strand, within MPMX20_02250at 2363.143 kb on + strand, within MPMX20_02250at 2363.143 kb on + strand, within MPMX20_02250at 2363.151 kb on - strand, within MPMX20_02250at 2363.234 kb on - strand, within MPMX20_02250at 2363.328 kb on + strand, within MPMX20_02250at 2363.405 kb on - strandat 2363.439 kb on + strandat 2363.447 kb on - strandat 2363.447 kb on - strandat 2363.447 kb on - strandat 2363.447 kb on - strandat 2363.522 kb on + strandat 2363.580 kb on + strandat 2363.669 kb on - strandat 2363.671 kb on - strandat 2363.697 kb on + strand, within MPMX20_02251at 2363.803 kb on + strand, within MPMX20_02251at 2363.803 kb on + strand, within MPMX20_02251at 2363.816 kb on - strand, within MPMX20_02251at 2363.821 kb on + strand, within MPMX20_02251at 2364.073 kb on - strand, within MPMX20_02251at 2364.073 kb on - strand, within MPMX20_02251at 2364.176 kb on + strand, within MPMX20_02251at 2364.254 kb on - strand, within MPMX20_02251at 2364.256 kb on - strand, within MPMX20_02251at 2364.256 kb on - strand, within MPMX20_02251at 2364.276 kb on - strand, within MPMX20_02251at 2364.361 kb on - strand, within MPMX20_02251at 2364.394 kb on - strand, within MPMX20_02251at 2364.402 kb on + strand, within MPMX20_02251at 2364.407 kb on + strand, within MPMX20_02251at 2364.450 kb on + strand, within MPMX20_02251

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Per-strain Table

Position Strand Gene LocusTag Fraction Parabanic Acid (N)
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2,361,242 + MPMX20_02249 0.28 -0.1
2,361,430 + MPMX20_02249 0.45 +0.2
2,361,606 - MPMX20_02249 0.61 +0.4
2,361,611 - MPMX20_02249 0.62 +0.2
2,361,705 + MPMX20_02249 0.70 -0.7
2,361,934 - -0.9
2,362,036 - -1.0
2,362,047 + -1.5
2,362,068 + -1.7
2,362,071 - -0.8
2,362,076 - -0.5
2,362,081 - -2.2
2,362,081 - -0.5
2,362,157 + -0.8
2,362,203 + -0.7
2,362,203 + -1.0
2,362,203 + -1.3
2,362,203 + +0.7
2,362,203 + -0.6
2,362,211 - -2.2
2,362,211 - -1.4
2,362,290 - -3.7
2,362,399 - MPMX20_02250 0.13 -2.9
2,362,458 + MPMX20_02250 0.17 -2.7
2,362,550 + MPMX20_02250 0.25 -1.0
2,362,556 + MPMX20_02250 0.25 -2.3
2,362,594 - MPMX20_02250 0.28 -2.7
2,362,611 + MPMX20_02250 0.29 -3.1
2,362,611 + MPMX20_02250 0.29 -1.8
2,362,619 - MPMX20_02250 0.30 -1.9
2,362,619 - MPMX20_02250 0.30 -3.3
2,362,626 + MPMX20_02250 0.31 -1.2
2,362,634 - MPMX20_02250 0.31 -2.8
2,362,634 - MPMX20_02250 0.31 -0.2
2,362,634 - MPMX20_02250 0.31 -3.7
2,362,634 - MPMX20_02250 0.31 -1.1
2,362,634 - MPMX20_02250 0.31 -2.0
2,362,641 + MPMX20_02250 0.32 -0.6
2,362,646 + MPMX20_02250 0.32 -1.5
2,362,720 + MPMX20_02250 0.38 -3.9
2,362,728 - MPMX20_02250 0.39 +0.1
2,362,842 + MPMX20_02250 0.48 -3.1
2,362,842 + MPMX20_02250 0.48 -0.8
2,362,850 - MPMX20_02250 0.48 -2.2
2,362,850 - MPMX20_02250 0.48 -1.8
2,362,850 - MPMX20_02250 0.48 -0.6
2,362,887 - MPMX20_02250 0.51 -4.4
2,362,914 - MPMX20_02250 0.53 -0.1
2,363,016 - MPMX20_02250 0.61 +0.5
2,363,040 + MPMX20_02250 0.63 -3.4
2,363,059 - MPMX20_02250 0.65 -1.5
2,363,143 + MPMX20_02250 0.71 -0.1
2,363,143 + MPMX20_02250 0.71 -2.8
2,363,151 - MPMX20_02250 0.72 -1.9
2,363,234 - MPMX20_02250 0.78 +1.5
2,363,328 + MPMX20_02250 0.86 -3.3
2,363,405 - -0.6
2,363,439 + +0.5
2,363,447 - -0.9
2,363,447 - -3.6
2,363,447 - -2.1
2,363,447 - -1.8
2,363,522 + +0.0
2,363,580 + -0.8
2,363,669 - -1.7
2,363,671 - +1.5
2,363,697 + MPMX20_02251 0.10 -2.9
2,363,803 + MPMX20_02251 0.17 -4.1
2,363,803 + MPMX20_02251 0.17 -0.7
2,363,816 - MPMX20_02251 0.18 -1.5
2,363,821 + MPMX20_02251 0.18 -2.0
2,364,073 - MPMX20_02251 0.34 -2.2
2,364,073 - MPMX20_02251 0.34 -4.2
2,364,176 + MPMX20_02251 0.41 -1.8
2,364,254 - MPMX20_02251 0.46 -0.1
2,364,256 - MPMX20_02251 0.46 -3.2
2,364,256 - MPMX20_02251 0.46 -0.4
2,364,276 - MPMX20_02251 0.47 -1.3
2,364,361 - MPMX20_02251 0.53 -2.6
2,364,394 - MPMX20_02251 0.55 -2.1
2,364,402 + MPMX20_02251 0.55 -1.7
2,364,407 + MPMX20_02251 0.55 -2.1
2,364,450 + MPMX20_02251 0.58 -1.8

Or see this region's nucleotide sequence