Strain Fitness in Enterobacter sp. TBS_079 around MPMX20_01667

Experiment: Parabanic Acid (N)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntMPMX20_01666 and MPMX20_01667 are separated by 153 nucleotidesMPMX20_01667 and MPMX20_01668 are separated by 192 nucleotidesMPMX20_01668 and MPMX20_01669 are separated by 4 nucleotides MPMX20_01666: MPMX20_01666 - Oxamate amidohydrolase proenzyme, at 1,764,027 to 1,765,610 _01666 MPMX20_01667: MPMX20_01667 - hypothetical protein, at 1,765,764 to 1,766,603 _01667 MPMX20_01668: MPMX20_01668 - L-cystine-binding protein FliY, at 1,766,796 to 1,767,578 _01668 MPMX20_01669: MPMX20_01669 - putative glutamine ABC transporter permease protein GlnM, at 1,767,583 to 1,768,248 _01669 Position (kb) 1765 1766 1767Strain fitness (log2 ratio) -2 -1 0 1 2 3at 1764.796 kb on + strand, within MPMX20_01666at 1764.820 kb on - strand, within MPMX20_01666at 1764.864 kb on + strand, within MPMX20_01666at 1764.872 kb on - strand, within MPMX20_01666at 1764.943 kb on + strand, within MPMX20_01666at 1765.038 kb on - strand, within MPMX20_01666at 1765.040 kb on - strand, within MPMX20_01666at 1765.047 kb on + strand, within MPMX20_01666at 1765.130 kb on + strand, within MPMX20_01666at 1765.266 kb on - strand, within MPMX20_01666at 1765.313 kb on - strand, within MPMX20_01666at 1765.371 kb on - strand, within MPMX20_01666at 1765.375 kb on - strand, within MPMX20_01666at 1765.456 kb on + strandat 1765.476 kb on - strandat 1765.539 kb on + strandat 1765.547 kb on - strandat 1765.770 kb on - strandat 1765.812 kb on + strandat 1765.819 kb on + strandat 1765.819 kb on + strandat 1765.874 kb on - strand, within MPMX20_01667at 1765.876 kb on + strand, within MPMX20_01667at 1765.892 kb on + strand, within MPMX20_01667at 1765.900 kb on - strand, within MPMX20_01667at 1765.904 kb on + strand, within MPMX20_01667at 1765.943 kb on - strand, within MPMX20_01667at 1765.952 kb on + strand, within MPMX20_01667at 1765.959 kb on - strand, within MPMX20_01667at 1765.971 kb on + strand, within MPMX20_01667at 1765.989 kb on - strand, within MPMX20_01667at 1766.030 kb on + strand, within MPMX20_01667at 1766.035 kb on + strand, within MPMX20_01667at 1766.038 kb on - strand, within MPMX20_01667at 1766.038 kb on - strand, within MPMX20_01667at 1766.095 kb on - strand, within MPMX20_01667at 1766.103 kb on + strand, within MPMX20_01667at 1766.129 kb on - strand, within MPMX20_01667at 1766.168 kb on + strand, within MPMX20_01667at 1766.176 kb on - strand, within MPMX20_01667at 1766.442 kb on + strand, within MPMX20_01667at 1766.442 kb on + strand, within MPMX20_01667at 1766.450 kb on - strand, within MPMX20_01667at 1766.465 kb on + strand, within MPMX20_01667at 1766.504 kb on + strand, within MPMX20_01667at 1766.587 kb on + strandat 1766.587 kb on + strandat 1766.595 kb on - strandat 1766.819 kb on + strandat 1766.827 kb on - strandat 1766.827 kb on - strandat 1766.893 kb on - strand, within MPMX20_01668at 1766.936 kb on + strand, within MPMX20_01668at 1766.941 kb on + strand, within MPMX20_01668at 1766.949 kb on - strand, within MPMX20_01668at 1766.949 kb on - strand, within MPMX20_01668at 1767.010 kb on + strand, within MPMX20_01668at 1767.082 kb on + strand, within MPMX20_01668at 1767.183 kb on - strand, within MPMX20_01668at 1767.183 kb on - strand, within MPMX20_01668at 1767.195 kb on + strand, within MPMX20_01668at 1767.201 kb on - strand, within MPMX20_01668at 1767.244 kb on + strand, within MPMX20_01668at 1767.245 kb on - strand, within MPMX20_01668at 1767.249 kb on + strand, within MPMX20_01668at 1767.249 kb on + strand, within MPMX20_01668at 1767.252 kb on - strand, within MPMX20_01668at 1767.304 kb on + strand, within MPMX20_01668at 1767.312 kb on - strand, within MPMX20_01668at 1767.335 kb on + strand, within MPMX20_01668at 1767.343 kb on - strand, within MPMX20_01668at 1767.405 kb on + strand, within MPMX20_01668at 1767.528 kb on - strandat 1767.529 kb on + strandat 1767.537 kb on - strandat 1767.565 kb on + strandat 1767.573 kb on - strandat 1767.573 kb on - strandat 1767.579 kb on + strandat 1767.579 kb on + strandat 1767.587 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Parabanic Acid (N)
remove
1,764,796 + MPMX20_01666 0.49 +0.4
1,764,820 - MPMX20_01666 0.50 -0.9
1,764,864 + MPMX20_01666 0.53 +0.7
1,764,872 - MPMX20_01666 0.53 -1.0
1,764,943 + MPMX20_01666 0.58 +1.4
1,765,038 - MPMX20_01666 0.64 +0.3
1,765,040 - MPMX20_01666 0.64 -0.5
1,765,047 + MPMX20_01666 0.64 +1.6
1,765,130 + MPMX20_01666 0.70 +0.0
1,765,266 - MPMX20_01666 0.78 -1.3
1,765,313 - MPMX20_01666 0.81 +0.1
1,765,371 - MPMX20_01666 0.85 +1.3
1,765,375 - MPMX20_01666 0.85 +1.8
1,765,456 + -0.0
1,765,476 - -0.4
1,765,539 + +0.7
1,765,547 - +0.3
1,765,770 - +0.3
1,765,812 + +1.2
1,765,819 + +1.0
1,765,819 + +2.3
1,765,874 - MPMX20_01667 0.13 +2.0
1,765,876 + MPMX20_01667 0.13 -0.5
1,765,892 + MPMX20_01667 0.15 -0.2
1,765,900 - MPMX20_01667 0.16 +0.8
1,765,904 + MPMX20_01667 0.17 +0.7
1,765,943 - MPMX20_01667 0.21 +1.2
1,765,952 + MPMX20_01667 0.22 +0.9
1,765,959 - MPMX20_01667 0.23 +1.2
1,765,971 + MPMX20_01667 0.25 -0.1
1,765,989 - MPMX20_01667 0.27 +3.2
1,766,030 + MPMX20_01667 0.32 +2.0
1,766,035 + MPMX20_01667 0.32 +1.3
1,766,038 - MPMX20_01667 0.33 +0.5
1,766,038 - MPMX20_01667 0.33 +0.9
1,766,095 - MPMX20_01667 0.39 -2.3
1,766,103 + MPMX20_01667 0.40 +1.3
1,766,129 - MPMX20_01667 0.43 +1.9
1,766,168 + MPMX20_01667 0.48 +1.2
1,766,176 - MPMX20_01667 0.49 +0.5
1,766,442 + MPMX20_01667 0.81 +2.0
1,766,442 + MPMX20_01667 0.81 +1.8
1,766,450 - MPMX20_01667 0.82 +0.7
1,766,465 + MPMX20_01667 0.83 +0.4
1,766,504 + MPMX20_01667 0.88 +1.2
1,766,587 + +0.5
1,766,587 + +0.1
1,766,595 - +0.8
1,766,819 + -0.0
1,766,827 - -1.8
1,766,827 - -2.0
1,766,893 - MPMX20_01668 0.12 +0.0
1,766,936 + MPMX20_01668 0.18 -1.8
1,766,941 + MPMX20_01668 0.19 -0.8
1,766,949 - MPMX20_01668 0.20 -1.3
1,766,949 - MPMX20_01668 0.20 +1.5
1,767,010 + MPMX20_01668 0.27 +0.2
1,767,082 + MPMX20_01668 0.37 -1.3
1,767,183 - MPMX20_01668 0.49 -1.3
1,767,183 - MPMX20_01668 0.49 +0.9
1,767,195 + MPMX20_01668 0.51 +0.2
1,767,201 - MPMX20_01668 0.52 -0.3
1,767,244 + MPMX20_01668 0.57 -1.5
1,767,245 - MPMX20_01668 0.57 -0.4
1,767,249 + MPMX20_01668 0.58 +0.6
1,767,249 + MPMX20_01668 0.58 +2.1
1,767,252 - MPMX20_01668 0.58 +0.1
1,767,304 + MPMX20_01668 0.65 -1.9
1,767,312 - MPMX20_01668 0.66 -0.8
1,767,335 + MPMX20_01668 0.69 +0.3
1,767,343 - MPMX20_01668 0.70 +0.9
1,767,405 + MPMX20_01668 0.78 -1.1
1,767,528 - +0.2
1,767,529 + -0.4
1,767,537 - +0.2
1,767,565 + -1.0
1,767,573 - +1.0
1,767,573 - +0.5
1,767,579 + +0.1
1,767,579 + -1.3
1,767,587 - -1.0

Or see this region's nucleotide sequence