Strain Fitness in Enterobacter sp. TBS_079 around MPMX20_04759

Experiment: L-Valine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX20_04758 and MPMX20_04759 are separated by 424 nucleotidesMPMX20_04759 and MPMX20_04760 overlap by 50 nucleotidesMPMX20_04760 and MPMX20_04761 are separated by 24 nucleotides MPMX20_04758: MPMX20_04758 - hypothetical protein, at 107,407 to 108,471 _04758 MPMX20_04759: MPMX20_04759 - IS3 family transposase ISYen3, at 108,896 to 109,153 _04759 MPMX20_04760: MPMX20_04760 - IS3 family transposase ISRaq1, at 109,104 to 109,793 _04760 MPMX20_04761: MPMX20_04761 - IS3 family transposase IS1222, at 109,818 to 109,997 _04761 Position (kb) 108 109 110Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 107.896 kb on + strand, within MPMX20_04758at 107.908 kb on + strand, within MPMX20_04758at 107.927 kb on + strand, within MPMX20_04758at 107.929 kb on + strand, within MPMX20_04758at 107.929 kb on + strand, within MPMX20_04758at 107.937 kb on - strand, within MPMX20_04758at 107.957 kb on + strand, within MPMX20_04758at 107.966 kb on + strand, within MPMX20_04758at 108.005 kb on - strand, within MPMX20_04758at 108.017 kb on - strand, within MPMX20_04758at 108.023 kb on + strand, within MPMX20_04758at 108.024 kb on + strand, within MPMX20_04758at 108.032 kb on - strand, within MPMX20_04758at 108.037 kb on - strand, within MPMX20_04758at 108.041 kb on + strand, within MPMX20_04758at 108.077 kb on - strand, within MPMX20_04758at 108.077 kb on - strand, within MPMX20_04758at 108.077 kb on - strand, within MPMX20_04758at 108.091 kb on + strand, within MPMX20_04758at 108.122 kb on - strand, within MPMX20_04758at 108.151 kb on + strand, within MPMX20_04758at 108.151 kb on + strand, within MPMX20_04758at 108.159 kb on - strand, within MPMX20_04758at 108.168 kb on - strand, within MPMX20_04758at 108.168 kb on - strand, within MPMX20_04758at 108.173 kb on + strand, within MPMX20_04758at 108.178 kb on + strand, within MPMX20_04758at 108.183 kb on + strand, within MPMX20_04758at 108.183 kb on + strand, within MPMX20_04758at 108.186 kb on - strand, within MPMX20_04758at 108.188 kb on - strand, within MPMX20_04758at 108.188 kb on - strand, within MPMX20_04758at 108.234 kb on + strand, within MPMX20_04758at 108.255 kb on - strand, within MPMX20_04758at 108.280 kb on + strand, within MPMX20_04758at 108.280 kb on + strand, within MPMX20_04758at 108.287 kb on - strand, within MPMX20_04758at 108.298 kb on + strand, within MPMX20_04758at 108.317 kb on + strand, within MPMX20_04758at 108.317 kb on + strand, within MPMX20_04758at 108.317 kb on + strand, within MPMX20_04758at 108.325 kb on - strand, within MPMX20_04758at 108.325 kb on - strand, within MPMX20_04758at 108.325 kb on - strand, within MPMX20_04758at 108.329 kb on - strand, within MPMX20_04758at 108.338 kb on + strand, within MPMX20_04758at 108.362 kb on + strand, within MPMX20_04758at 108.373 kb on - strandat 108.373 kb on - strandat 108.373 kb on - strandat 108.383 kb on - strandat 108.401 kb on - strandat 108.405 kb on + strandat 108.406 kb on - strandat 108.415 kb on + strandat 108.451 kb on + strandat 108.472 kb on - strandat 108.500 kb on + strandat 108.508 kb on - strandat 108.534 kb on + strandat 108.542 kb on - strandat 108.591 kb on + strandat 108.596 kb on + strandat 108.596 kb on + strandat 108.597 kb on - strandat 108.604 kb on - strandat 108.604 kb on - strandat 108.648 kb on + strandat 108.648 kb on + strandat 108.648 kb on + strandat 108.653 kb on + strandat 108.654 kb on - strandat 108.656 kb on - strandat 108.674 kb on - strandat 108.696 kb on + strandat 108.708 kb on + strandat 108.708 kb on + strandat 108.718 kb on + strandat 108.718 kb on + strandat 108.718 kb on + strandat 108.718 kb on + strandat 108.718 kb on + strandat 108.718 kb on + strandat 108.718 kb on + strandat 108.718 kb on + strandat 108.721 kb on - strandat 108.721 kb on - strandat 108.726 kb on - strandat 108.726 kb on - strandat 108.726 kb on - strandat 108.726 kb on - strandat 108.726 kb on - strandat 108.726 kb on - strandat 108.745 kb on - strandat 108.762 kb on - strandat 108.767 kb on + strandat 108.774 kb on + strandat 108.781 kb on + strandat 108.799 kb on + strandat 108.817 kb on - strandat 108.827 kb on + strandat 108.827 kb on + strandat 108.827 kb on + strandat 108.827 kb on + strandat 108.828 kb on + strandat 108.835 kb on - strandat 108.835 kb on - strandat 108.835 kb on - strandat 108.835 kb on - strandat 108.835 kb on - strandat 108.863 kb on - strandat 108.863 kb on - strandat 108.868 kb on + strandat 108.880 kb on + strandat 108.880 kb on + strandat 108.880 kb on + strandat 108.888 kb on - strandat 108.888 kb on - strandat 108.893 kb on + strandat 108.935 kb on - strand, within MPMX20_04759at 108.935 kb on - strand, within MPMX20_04759at 108.947 kb on - strand, within MPMX20_04759at 109.045 kb on - strand, within MPMX20_04759at 109.072 kb on + strand, within MPMX20_04759at 109.080 kb on - strand, within MPMX20_04759at 109.095 kb on + strand, within MPMX20_04759at 109.110 kb on + strandat 109.142 kb on + strandat 109.142 kb on + strandat 109.142 kb on + strandat 109.142 kb on + strandat 109.150 kb on - strandat 109.150 kb on - strandat 109.150 kb on - strandat 109.152 kb on + strandat 109.154 kb on + strandat 109.162 kb on - strandat 109.169 kb on - strandat 109.169 kb on - strandat 109.193 kb on - strand, within MPMX20_04760at 109.246 kb on - strand, within MPMX20_04760at 109.256 kb on - strand, within MPMX20_04760at 109.258 kb on + strand, within MPMX20_04760at 109.261 kb on - strand, within MPMX20_04760at 109.298 kb on + strand, within MPMX20_04760at 109.330 kb on - strand, within MPMX20_04760at 109.330 kb on - strand, within MPMX20_04760at 109.332 kb on + strand, within MPMX20_04760at 109.411 kb on + strand, within MPMX20_04760at 109.469 kb on + strand, within MPMX20_04760at 109.510 kb on + strand, within MPMX20_04760at 109.510 kb on + strand, within MPMX20_04760at 109.523 kb on + strand, within MPMX20_04760at 109.526 kb on + strand, within MPMX20_04760at 109.581 kb on + strand, within MPMX20_04760at 109.586 kb on + strand, within MPMX20_04760at 109.606 kb on - strand, within MPMX20_04760at 109.616 kb on - strand, within MPMX20_04760at 109.639 kb on - strand, within MPMX20_04760at 109.648 kb on + strand, within MPMX20_04760at 109.672 kb on - strand, within MPMX20_04760at 109.710 kb on + strand, within MPMX20_04760at 109.718 kb on - strand, within MPMX20_04760at 109.731 kb on + strandat 109.739 kb on - strandat 109.739 kb on - strandat 109.743 kb on + strandat 109.777 kb on - strandat 109.811 kb on + strandat 109.829 kb on - strandat 109.849 kb on + strand, within MPMX20_04761at 109.865 kb on + strand, within MPMX20_04761at 109.873 kb on + strand, within MPMX20_04761at 109.873 kb on - strand, within MPMX20_04761at 109.873 kb on - strand, within MPMX20_04761at 109.873 kb on - strand, within MPMX20_04761at 109.894 kb on + strand, within MPMX20_04761at 109.902 kb on - strand, within MPMX20_04761at 109.925 kb on - strand, within MPMX20_04761at 109.937 kb on - strand, within MPMX20_04761at 109.937 kb on - strand, within MPMX20_04761at 109.963 kb on + strand, within MPMX20_04761at 110.004 kb on + strandat 110.004 kb on + strandat 110.004 kb on + strandat 110.009 kb on + strandat 110.012 kb on - strandat 110.012 kb on - strandat 110.012 kb on - strandat 110.014 kb on + strandat 110.022 kb on - strandat 110.022 kb on - strandat 110.044 kb on + strandat 110.044 kb on + strandat 110.044 kb on + strandat 110.044 kb on + strandat 110.044 kb on + strandat 110.044 kb on + strandat 110.052 kb on - strandat 110.052 kb on - strandat 110.052 kb on - strandat 110.054 kb on + strandat 110.057 kb on - strandat 110.062 kb on - strandat 110.064 kb on + strandat 110.064 kb on + strandat 110.065 kb on - strandat 110.067 kb on - strandat 110.072 kb on - strandat 110.072 kb on - strandat 110.072 kb on - strandat 110.072 kb on - strandat 110.072 kb on - strandat 110.072 kb on - strandat 110.072 kb on - strandat 110.079 kb on + strandat 110.081 kb on + strandat 110.081 kb on + strandat 110.081 kb on + strandat 110.099 kb on - strandat 110.122 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Valine (N)
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107,896 + MPMX20_04758 0.46 -0.2
107,908 + MPMX20_04758 0.47 -0.4
107,927 + MPMX20_04758 0.49 +1.6
107,929 + MPMX20_04758 0.49 +1.0
107,929 + MPMX20_04758 0.49 +1.3
107,937 - MPMX20_04758 0.50 -0.5
107,957 + MPMX20_04758 0.52 -0.6
107,966 + MPMX20_04758 0.52 -0.9
108,005 - MPMX20_04758 0.56 -1.0
108,017 - MPMX20_04758 0.57 -1.2
108,023 + MPMX20_04758 0.58 -0.3
108,024 + MPMX20_04758 0.58 -0.0
108,032 - MPMX20_04758 0.59 -0.1
108,037 - MPMX20_04758 0.59 -2.4
108,041 + MPMX20_04758 0.60 -0.0
108,077 - MPMX20_04758 0.63 -0.3
108,077 - MPMX20_04758 0.63 -0.9
108,077 - MPMX20_04758 0.63 -0.5
108,091 + MPMX20_04758 0.64 -1.5
108,122 - MPMX20_04758 0.67 -0.9
108,151 + MPMX20_04758 0.70 +1.6
108,151 + MPMX20_04758 0.70 -0.3
108,159 - MPMX20_04758 0.71 -0.1
108,168 - MPMX20_04758 0.71 -0.2
108,168 - MPMX20_04758 0.71 -0.5
108,173 + MPMX20_04758 0.72 +1.0
108,178 + MPMX20_04758 0.72 -0.8
108,183 + MPMX20_04758 0.73 -1.2
108,183 + MPMX20_04758 0.73 +0.3
108,186 - MPMX20_04758 0.73 +2.0
108,188 - MPMX20_04758 0.73 -1.8
108,188 - MPMX20_04758 0.73 +1.2
108,234 + MPMX20_04758 0.78 +0.1
108,255 - MPMX20_04758 0.80 +0.3
108,280 + MPMX20_04758 0.82 -0.1
108,280 + MPMX20_04758 0.82 +0.5
108,287 - MPMX20_04758 0.83 -2.5
108,298 + MPMX20_04758 0.84 +0.6
108,317 + MPMX20_04758 0.85 -0.3
108,317 + MPMX20_04758 0.85 -1.3
108,317 + MPMX20_04758 0.85 -1.2
108,325 - MPMX20_04758 0.86 +1.0
108,325 - MPMX20_04758 0.86 +1.6
108,325 - MPMX20_04758 0.86 -0.2
108,329 - MPMX20_04758 0.87 -0.6
108,338 + MPMX20_04758 0.87 -0.4
108,362 + MPMX20_04758 0.90 +0.8
108,373 - -0.3
108,373 - +0.1
108,373 - +1.6
108,383 - -0.4
108,401 - +0.7
108,405 + +0.2
108,406 - +0.1
108,415 + +0.6
108,451 + +2.8
108,472 - -0.5
108,500 + +3.2
108,508 - +1.8
108,534 + -1.2
108,542 - +1.8
108,591 + +1.0
108,596 + +0.6
108,596 + -1.3
108,597 - +0.6
108,604 - +0.2
108,604 - -1.6
108,648 + -0.2
108,648 + -1.3
108,648 + +0.6
108,653 + +0.7
108,654 - +0.8
108,656 - -0.6
108,674 - +3.0
108,696 + +1.2
108,708 + -0.7
108,708 + -1.5
108,718 + +0.3
108,718 + -1.3
108,718 + -0.6
108,718 + -1.0
108,718 + +0.1
108,718 + +2.2
108,718 + -0.7
108,718 + +0.9
108,721 - +0.4
108,721 - +0.6
108,726 - -0.3
108,726 - -0.7
108,726 - -0.3
108,726 - -1.4
108,726 - -0.6
108,726 - +2.6
108,745 - -0.5
108,762 - +1.0
108,767 + +1.6
108,774 + +0.9
108,781 + -0.8
108,799 + -0.1
108,817 - -1.1
108,827 + +0.1
108,827 + -0.4
108,827 + -1.8
108,827 + -1.1
108,828 + +3.6
108,835 - -0.0
108,835 - -0.6
108,835 - -0.8
108,835 - -1.1
108,835 - -0.0
108,863 - +1.9
108,863 - -0.2
108,868 + +0.1
108,880 + -1.3
108,880 + +1.1
108,880 + -0.4
108,888 - -0.0
108,888 - -0.9
108,893 + +0.1
108,935 - MPMX20_04759 0.15 -0.9
108,935 - MPMX20_04759 0.15 -3.2
108,947 - MPMX20_04759 0.20 +0.7
109,045 - MPMX20_04759 0.58 -1.0
109,072 + MPMX20_04759 0.68 -0.6
109,080 - MPMX20_04759 0.71 -1.3
109,095 + MPMX20_04759 0.77 -1.4
109,110 + +0.6
109,142 + +1.2
109,142 + +0.6
109,142 + -0.5
109,142 + -0.5
109,150 - -0.9
109,150 - -1.6
109,150 - +1.7
109,152 + +2.6
109,154 + -0.9
109,162 - +0.1
109,169 - +2.4
109,169 - -0.7
109,193 - MPMX20_04760 0.13 -0.7
109,246 - MPMX20_04760 0.21 -0.6
109,256 - MPMX20_04760 0.22 +0.2
109,258 + MPMX20_04760 0.22 +0.2
109,261 - MPMX20_04760 0.23 -0.0
109,298 + MPMX20_04760 0.28 +0.3
109,330 - MPMX20_04760 0.33 -0.9
109,330 - MPMX20_04760 0.33 -1.1
109,332 + MPMX20_04760 0.33 +0.5
109,411 + MPMX20_04760 0.44 -1.1
109,469 + MPMX20_04760 0.53 +2.6
109,510 + MPMX20_04760 0.59 -2.6
109,510 + MPMX20_04760 0.59 +1.1
109,523 + MPMX20_04760 0.61 -0.6
109,526 + MPMX20_04760 0.61 +0.1
109,581 + MPMX20_04760 0.69 +0.9
109,586 + MPMX20_04760 0.70 +0.6
109,606 - MPMX20_04760 0.73 +1.3
109,616 - MPMX20_04760 0.74 -0.2
109,639 - MPMX20_04760 0.78 -0.4
109,648 + MPMX20_04760 0.79 -0.1
109,672 - MPMX20_04760 0.82 -0.7
109,710 + MPMX20_04760 0.88 +1.0
109,718 - MPMX20_04760 0.89 -0.2
109,731 + +1.5
109,739 - -0.0
109,739 - -0.8
109,743 + +1.3
109,777 - +1.7
109,811 + +0.9
109,829 - -1.3
109,849 + MPMX20_04761 0.17 -0.1
109,865 + MPMX20_04761 0.26 +0.3
109,873 + MPMX20_04761 0.31 +0.3
109,873 - MPMX20_04761 0.31 +2.2
109,873 - MPMX20_04761 0.31 +0.9
109,873 - MPMX20_04761 0.31 -0.9
109,894 + MPMX20_04761 0.42 +1.3
109,902 - MPMX20_04761 0.47 -0.2
109,925 - MPMX20_04761 0.59 -0.4
109,937 - MPMX20_04761 0.66 -0.7
109,937 - MPMX20_04761 0.66 -0.0
109,963 + MPMX20_04761 0.81 -0.5
110,004 + -0.2
110,004 + -0.0
110,004 + -1.3
110,009 + +0.1
110,012 - -2.1
110,012 - +1.0
110,012 - -0.5
110,014 + -1.7
110,022 - +1.3
110,022 - -1.4
110,044 + -0.2
110,044 + -1.8
110,044 + +0.4
110,044 + -0.0
110,044 + -0.0
110,044 + +0.1
110,052 - -2.1
110,052 - +0.4
110,052 - -0.3
110,054 + -0.4
110,057 - +2.6
110,062 - +2.0
110,064 + -0.7
110,064 + -1.3
110,065 - -0.2
110,067 - -1.4
110,072 - -0.0
110,072 - +2.6
110,072 - +0.7
110,072 - +1.1
110,072 - +0.5
110,072 - -1.0
110,072 - +1.8
110,079 + +0.6
110,081 + -1.5
110,081 + +0.6
110,081 + -2.1
110,099 - +2.0
110,122 - -0.6

Or see this region's nucleotide sequence