Experiment: L-Serine (N); Varel_Bryant_medium_Glucose_noMET_DTT_NaS_B12_noNitrogen
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS09910 and HMPREF1058_RS09905 are separated by 6 nucleotides HMPREF1058_RS09905 and HMPREF1058_RS09900 are separated by 204 nucleotides HMPREF1058_RS09900 and HMPREF1058_RS09895 are separated by 3 nucleotides HMPREF1058_RS09895 and HMPREF1058_RS09890 are separated by 23 nucleotides
HMPREF1058_RS09910: HMPREF1058_RS09910 - DUF3989 domain-containing protein, at 762,144 to 762,464
_RS09910
HMPREF1058_RS09905: HMPREF1058_RS09905 - conjugative transposon protein TraK, at 762,471 to 763,094
_RS09905
HMPREF1058_RS09900: HMPREF1058_RS09900 - conjugative transposon protein TraJ, at 763,299 to 764,303
_RS09900
HMPREF1058_RS09895: HMPREF1058_RS09895 - DUF4141 domain-containing protein, at 764,307 to 764,936
_RS09895
HMPREF1058_RS09890: HMPREF1058_RS09890 - DUF3876 domain-containing protein, at 764,960 to 765,340
_RS09890
Position (kb) 763
764
765 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 762.301 kb on + strand, within HMPREF1058_RS09910 at 762.301 kb on + strand, within HMPREF1058_RS09910 at 762.757 kb on + strand, within HMPREF1058_RS09905 at 762.763 kb on + strand, within HMPREF1058_RS09905 at 763.129 kb on + strand at 763.162 kb on + strand at 763.162 kb on + strand at 763.185 kb on + strand at 763.185 kb on + strand at 763.185 kb on + strand at 763.185 kb on + strand at 763.189 kb on + strand at 763.189 kb on + strand at 763.189 kb on + strand at 763.189 kb on + strand at 763.212 kb on + strand at 763.231 kb on + strand at 763.231 kb on + strand at 763.235 kb on + strand at 763.235 kb on + strand at 763.235 kb on + strand at 763.235 kb on + strand at 763.254 kb on + strand at 763.254 kb on + strand at 763.254 kb on + strand at 763.258 kb on + strand at 763.258 kb on + strand at 763.258 kb on + strand at 763.258 kb on + strand at 763.258 kb on + strand at 763.263 kb on + strand at 763.627 kb on + strand, within HMPREF1058_RS09900 at 763.828 kb on + strand, within HMPREF1058_RS09900 at 763.846 kb on + strand, within HMPREF1058_RS09900 at 763.846 kb on + strand, within HMPREF1058_RS09900 at 764.084 kb on + strand, within HMPREF1058_RS09900 at 764.303 kb on + strand at 764.383 kb on + strand, within HMPREF1058_RS09895 at 764.410 kb on + strand, within HMPREF1058_RS09895 at 764.638 kb on + strand, within HMPREF1058_RS09895 at 764.638 kb on + strand, within HMPREF1058_RS09895 at 764.731 kb on + strand, within HMPREF1058_RS09895 at 765.003 kb on + strand, within HMPREF1058_RS09890
Per-strain Table
Position Strand Gene LocusTag Fraction L-Serine (N); Varel_Bryant_medium_Glucose_noMET_DTT_NaS_B12_noNitrogen remove 762,301 + HMPREF1058_RS09910 0.49 -1.1 762,301 + HMPREF1058_RS09910 0.49 +0.7 762,757 + HMPREF1058_RS09905 0.46 -1.3 762,763 + HMPREF1058_RS09905 0.47 -2.4 763,129 + -0.2 763,162 + -0.4 763,162 + -0.1 763,185 + +2.3 763,185 + +1.1 763,185 + -0.9 763,185 + -1.6 763,189 + +0.7 763,189 + -0.6 763,189 + +0.2 763,189 + +0.1 763,212 + -1.4 763,231 + -2.3 763,231 + -2.2 763,235 + -0.5 763,235 + -1.5 763,235 + +1.5 763,235 + -1.4 763,254 + -2.5 763,254 + -0.6 763,254 + -1.0 763,258 + -0.8 763,258 + +2.3 763,258 + -2.4 763,258 + +0.2 763,258 + -0.5 763,263 + -1.0 763,627 + HMPREF1058_RS09900 0.33 -0.4 763,828 + HMPREF1058_RS09900 0.53 -0.2 763,846 + HMPREF1058_RS09900 0.54 -1.6 763,846 + HMPREF1058_RS09900 0.54 -1.2 764,084 + HMPREF1058_RS09900 0.78 -1.5 764,303 + -0.8 764,383 + HMPREF1058_RS09895 0.12 +0.5 764,410 + HMPREF1058_RS09895 0.16 -0.1 764,638 + HMPREF1058_RS09895 0.53 +0.7 764,638 + HMPREF1058_RS09895 0.53 +0.5 764,731 + HMPREF1058_RS09895 0.67 +1.1 765,003 + HMPREF1058_RS09890 0.11 -3.3
Or see this region's nucleotide sequence