Experiment: L-Rhamnose
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_00328 and ECD_00329 are separated by 462 nucleotides ECD_00329 and ECD_00330 are separated by 100 nucleotides
ECD_00328: ECD_00328 - D-alanine-D-alanine ligase A, at 364,454 to 365,548
_00328
ECD_00329: ECD_00329 - anti-RssB factor, RpoS stabilzer during Pi starvation; anti-adapter protein, at 366,011 to 366,271
_00329
ECD_00330: ECD_00330 - bacterial alkaline phosphatase, at 366,372 to 367,787
_00330
Position (kb) 366
367 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 365.166 kb on - strand, within ECD_00328 at 365.174 kb on + strand, within ECD_00328 at 365.417 kb on - strand, within ECD_00328 at 365.453 kb on - strand at 365.551 kb on + strand at 365.582 kb on + strand at 365.583 kb on - strand at 365.587 kb on + strand at 365.587 kb on + strand at 365.743 kb on - strand at 366.236 kb on + strand, within ECD_00329 at 366.323 kb on - strand at 366.349 kb on + strand at 366.623 kb on + strand, within ECD_00330 at 366.624 kb on - strand, within ECD_00330 at 366.627 kb on + strand, within ECD_00330 at 366.687 kb on + strand, within ECD_00330 at 366.697 kb on - strand, within ECD_00330 at 366.729 kb on + strand, within ECD_00330 at 366.783 kb on + strand, within ECD_00330 at 366.784 kb on - strand, within ECD_00330 at 366.878 kb on + strand, within ECD_00330 at 367.226 kb on + strand, within ECD_00330 at 367.226 kb on + strand, within ECD_00330 at 367.260 kb on + strand, within ECD_00330 at 367.260 kb on + strand, within ECD_00330
Per-strain Table
Position Strand Gene LocusTag Fraction L-Rhamnose remove 365,166 - ECD_00328 0.65 -0.7 365,174 + ECD_00328 0.66 -0.4 365,417 - ECD_00328 0.88 +0.6 365,453 - -0.2 365,551 + -0.7 365,582 + +0.7 365,583 - -0.1 365,587 + +0.2 365,587 + +1.3 365,743 - +0.5 366,236 + ECD_00329 0.86 -0.9 366,323 - +1.3 366,349 + -0.6 366,623 + ECD_00330 0.18 +0.3 366,624 - ECD_00330 0.18 +0.6 366,627 + ECD_00330 0.18 +0.2 366,687 + ECD_00330 0.22 +0.3 366,697 - ECD_00330 0.23 +0.3 366,729 + ECD_00330 0.25 -1.5 366,783 + ECD_00330 0.29 -2.9 366,784 - ECD_00330 0.29 +0.5 366,878 + ECD_00330 0.36 -0.3 367,226 + ECD_00330 0.60 -0.1 367,226 + ECD_00330 0.60 +0.6 367,260 + ECD_00330 0.63 +0.9 367,260 + ECD_00330 0.63 +0.2
Or see this region's nucleotide sequence