Strain Fitness in Escherichia coli BL21 around ECD_00002

Experiment: L-Rhamnose

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntECD_00001 and ECD_00002 are separated by 80 nucleotidesECD_00002 and ECD_00003 are separated by 1 nucleotidesECD_00003 and ECD_00004 are separated by 0 nucleotides ECD_00001: ECD_00001 - thr operon leader peptide, at 190 to 255 _00001 ECD_00002: ECD_00002 - Bifunctional aspartokinase/homoserine dehydrogenase 1, at 336 to 2,798 _00002 ECD_00003: ECD_00003 - homoserine kinase, at 2,800 to 3,732 _00003 ECD_00004: ECD_00004 - L-threonine synthase, at 3,733 to 5,019 _00004 Position (kb) 0 1 2 3Strain fitness (log2 ratio) -6 -5 -4 -3 -2 -1 0 1at 0.029 kb on + strandat 0.029 kb on + strandat 0.117 kb on + strandat 0.118 kb on - strandat 0.125 kb on + strandat 0.126 kb on - strandat 0.143 kb on + strandat 0.143 kb on + strandat 0.143 kb on + strandat 0.143 kb on + strandat 0.143 kb on + strandat 0.178 kb on + strandat 0.178 kb on + strandat 0.179 kb on - strandat 0.201 kb on + strand, within ECD_00001at 0.202 kb on - strand, within ECD_00001at 0.240 kb on + strand, within ECD_00001at 0.328 kb on + strandat 0.329 kb on - strandat 0.329 kb on - strandat 0.659 kb on + strand, within ECD_00002at 0.659 kb on + strand, within ECD_00002at 0.735 kb on - strand, within ECD_00002at 0.745 kb on + strand, within ECD_00002at 0.746 kb on - strand, within ECD_00002at 0.748 kb on + strand, within ECD_00002at 0.749 kb on - strand, within ECD_00002at 0.813 kb on + strand, within ECD_00002at 0.988 kb on + strand, within ECD_00002at 0.989 kb on - strand, within ECD_00002at 1.032 kb on + strand, within ECD_00002at 1.032 kb on + strand, within ECD_00002at 1.032 kb on + strand, within ECD_00002at 1.035 kb on - strand, within ECD_00002at 1.274 kb on + strand, within ECD_00002at 1.274 kb on + strand, within ECD_00002at 1.275 kb on - strand, within ECD_00002at 1.275 kb on - strand, within ECD_00002at 1.277 kb on + strand, within ECD_00002at 1.401 kb on + strand, within ECD_00002at 1.402 kb on - strand, within ECD_00002at 1.471 kb on - strand, within ECD_00002at 1.492 kb on + strand, within ECD_00002at 1.493 kb on - strand, within ECD_00002at 1.529 kb on + strand, within ECD_00002at 1.540 kb on + strand, within ECD_00002at 1.540 kb on + strand, within ECD_00002at 1.540 kb on + strand, within ECD_00002at 1.541 kb on - strand, within ECD_00002at 1.541 kb on - strand, within ECD_00002at 1.550 kb on + strand, within ECD_00002at 1.551 kb on - strand, within ECD_00002at 1.551 kb on - strand, within ECD_00002at 1.551 kb on - strand, within ECD_00002at 1.698 kb on - strand, within ECD_00002at 1.814 kb on + strand, within ECD_00002at 1.814 kb on + strand, within ECD_00002at 1.821 kb on - strand, within ECD_00002at 1.828 kb on + strand, within ECD_00002at 1.828 kb on + strand, within ECD_00002at 1.828 kb on + strand, within ECD_00002at 1.829 kb on - strand, within ECD_00002at 1.829 kb on - strand, within ECD_00002at 1.883 kb on - strand, within ECD_00002at 2.026 kb on - strand, within ECD_00002at 2.097 kb on + strand, within ECD_00002at 2.098 kb on - strand, within ECD_00002at 2.100 kb on + strand, within ECD_00002at 2.100 kb on + strand, within ECD_00002at 2.101 kb on - strand, within ECD_00002at 2.101 kb on - strand, within ECD_00002at 2.138 kb on + strand, within ECD_00002at 2.138 kb on + strand, within ECD_00002at 2.139 kb on - strand, within ECD_00002at 2.148 kb on + strand, within ECD_00002at 2.149 kb on - strand, within ECD_00002at 2.259 kb on + strand, within ECD_00002at 2.260 kb on - strand, within ECD_00002at 2.328 kb on + strand, within ECD_00002at 2.330 kb on + strand, within ECD_00002at 2.379 kb on - strand, within ECD_00002at 2.568 kb on + strandat 2.569 kb on - strandat 2.569 kb on - strandat 2.676 kb on + strandat 2.678 kb on + strandat 2.679 kb on - strandat 2.685 kb on + strandat 2.685 kb on + strandat 2.685 kb on + strandat 2.686 kb on - strandat 2.767 kb on + strandat 2.767 kb on + strandat 2.768 kb on - strandat 2.768 kb on - strandat 2.771 kb on + strandat 2.788 kb on + strandat 2.789 kb on - strandat 2.805 kb on + strandat 2.903 kb on + strand, within ECD_00003at 2.903 kb on + strand, within ECD_00003at 2.903 kb on + strand, within ECD_00003at 2.904 kb on - strand, within ECD_00003at 3.154 kb on - strand, within ECD_00003at 3.218 kb on - strand, within ECD_00003at 3.249 kb on + strand, within ECD_00003at 3.250 kb on - strand, within ECD_00003at 3.339 kb on + strand, within ECD_00003at 3.443 kb on - strand, within ECD_00003at 3.443 kb on - strand, within ECD_00003at 3.651 kb on + strandat 3.659 kb on - strandat 3.659 kb on - strandat 3.659 kb on - strandat 3.659 kb on - strandat 3.687 kb on + strandat 3.687 kb on + strandat 3.688 kb on - strandat 3.719 kb on + strandat 3.730 kb on + strandat 3.743 kb on - strandat 3.743 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Rhamnose
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29 + -0.2
29 + -1.0
117 + -1.6
118 - -2.9
125 + -0.9
126 - -5.7
143 + +0.5
143 + +0.9
143 + +0.3
143 + -0.1
143 + +0.3
178 + +0.9
178 + -0.2
179 - -1.7
201 + ECD_00001 0.17 +0.5
202 - ECD_00001 0.18 -3.5
240 + ECD_00001 0.76 +1.1
328 + -4.3
329 - -2.8
329 - -4.5
659 + ECD_00002 0.13 -4.3
659 + ECD_00002 0.13 -3.0
735 - ECD_00002 0.16 -3.1
745 + ECD_00002 0.17 -2.8
746 - ECD_00002 0.17 -1.0
748 + ECD_00002 0.17 -3.2
749 - ECD_00002 0.17 -3.3
813 + ECD_00002 0.19 -4.1
988 + ECD_00002 0.26 -2.7
989 - ECD_00002 0.27 -4.3
1,032 + ECD_00002 0.28 -4.2
1,032 + ECD_00002 0.28 -4.7
1,032 + ECD_00002 0.28 -5.0
1,035 - ECD_00002 0.28 -5.5
1,274 + ECD_00002 0.38 -2.1
1,274 + ECD_00002 0.38 -4.0
1,275 - ECD_00002 0.38 -6.2
1,275 - ECD_00002 0.38 -4.9
1,277 + ECD_00002 0.38 -6.0
1,401 + ECD_00002 0.43 -2.5
1,402 - ECD_00002 0.43 -4.7
1,471 - ECD_00002 0.46 -4.0
1,492 + ECD_00002 0.47 -2.5
1,493 - ECD_00002 0.47 -2.1
1,529 + ECD_00002 0.48 -2.6
1,540 + ECD_00002 0.49 -5.8
1,540 + ECD_00002 0.49 -6.2
1,540 + ECD_00002 0.49 -5.0
1,541 - ECD_00002 0.49 -5.0
1,541 - ECD_00002 0.49 -5.2
1,550 + ECD_00002 0.49 -4.9
1,551 - ECD_00002 0.49 -3.6
1,551 - ECD_00002 0.49 -2.0
1,551 - ECD_00002 0.49 -4.0
1,698 - ECD_00002 0.55 -5.2
1,814 + ECD_00002 0.60 -4.4
1,814 + ECD_00002 0.60 -3.8
1,821 - ECD_00002 0.60 -3.4
1,828 + ECD_00002 0.61 -3.6
1,828 + ECD_00002 0.61 -1.0
1,828 + ECD_00002 0.61 -4.1
1,829 - ECD_00002 0.61 -5.4
1,829 - ECD_00002 0.61 -2.2
1,883 - ECD_00002 0.63 -3.8
2,026 - ECD_00002 0.69 -2.3
2,097 + ECD_00002 0.71 -2.9
2,098 - ECD_00002 0.72 -3.5
2,100 + ECD_00002 0.72 -2.0
2,100 + ECD_00002 0.72 -2.7
2,101 - ECD_00002 0.72 -2.6
2,101 - ECD_00002 0.72 -3.2
2,138 + ECD_00002 0.73 -5.0
2,138 + ECD_00002 0.73 -3.6
2,139 - ECD_00002 0.73 -2.4
2,148 + ECD_00002 0.74 -3.9
2,149 - ECD_00002 0.74 -3.7
2,259 + ECD_00002 0.78 -3.6
2,260 - ECD_00002 0.78 -4.2
2,328 + ECD_00002 0.81 -3.8
2,330 + ECD_00002 0.81 -4.0
2,379 - ECD_00002 0.83 -3.0
2,568 + -2.8
2,569 - -2.5
2,569 - -2.8
2,676 + -2.0
2,678 + -1.9
2,679 - -4.4
2,685 + -5.6
2,685 + -5.0
2,685 + -1.6
2,686 - -4.2
2,767 + -0.5
2,767 + -3.5
2,768 - -4.3
2,768 - -3.2
2,771 + +0.0
2,788 + +0.0
2,789 - -1.5
2,805 + -4.2
2,903 + ECD_00003 0.11 -4.6
2,903 + ECD_00003 0.11 -4.8
2,903 + ECD_00003 0.11 -2.0
2,904 - ECD_00003 0.11 -4.4
3,154 - ECD_00003 0.38 -5.6
3,218 - ECD_00003 0.45 -1.8
3,249 + ECD_00003 0.48 -4.9
3,250 - ECD_00003 0.48 -4.1
3,339 + ECD_00003 0.58 -2.1
3,443 - ECD_00003 0.69 -3.0
3,443 - ECD_00003 0.69 -4.8
3,651 + -2.3
3,659 - -3.8
3,659 - -4.7
3,659 - -3.9
3,659 - -5.9
3,687 + -1.7
3,687 + -4.0
3,688 - -4.0
3,719 + -0.3
3,730 + +0.5
3,743 - -4.1
3,743 - -4.1

Or see this region's nucleotide sequence