Strain Fitness in Escherichia coli BL21 around ECD_00387

Experiment: L-Arabinose

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntECD_00385 and ECD_00386 are separated by 304 nucleotidesECD_00386 and ECD_00387 are separated by 343 nucleotidesECD_00387 and ECD_00388 are separated by 245 nucleotidesECD_00388 and ECD_00389 are separated by 125 nucleotides ECD_00385: ECD_00385 - putative lipoprotein, at 421,273 to 421,851 _00385 ECD_00386: ECD_00386 - stationary-phase morphogene, transcriptional repressor for mreB; also regulator for dacA, dacC, and ampC, at 422,156 to 422,473 _00386 ECD_00387: ECD_00387 - peptidyl-prolyl cis/trans isomerase (trigger factor), at 422,817 to 424,115 _00387 ECD_00388: ECD_00388 - proteolytic subunit of ClpA-ClpP and ClpX-ClpP ATP-dependent serine proteases, at 424,361 to 424,984 _00388 ECD_00389: ECD_00389 - ATPase and specificity subunit of ClpX-ClpP ATP-dependent serine protease, at 425,110 to 426,384 _00389 Position (kb) 422 423 424 425Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 421.873 kb on + strandat 421.874 kb on - strandat 421.874 kb on - strandat 421.942 kb on + strandat 422.032 kb on + strandat 422.066 kb on + strandat 422.066 kb on + strandat 422.067 kb on - strandat 422.076 kb on + strandat 422.175 kb on + strandat 422.220 kb on + strand, within ECD_00386at 422.365 kb on + strand, within ECD_00386at 422.366 kb on - strand, within ECD_00386at 422.390 kb on - strand, within ECD_00386at 422.390 kb on - strand, within ECD_00386at 422.390 kb on - strand, within ECD_00386at 422.393 kb on + strand, within ECD_00386at 422.393 kb on + strand, within ECD_00386at 422.394 kb on - strand, within ECD_00386at 422.394 kb on - strand, within ECD_00386at 422.394 kb on - strand, within ECD_00386at 422.394 kb on - strand, within ECD_00386at 422.398 kb on + strand, within ECD_00386at 422.399 kb on - strand, within ECD_00386at 422.399 kb on - strand, within ECD_00386at 422.666 kb on + strandat 422.730 kb on - strandat 422.731 kb on + strandat 422.810 kb on + strandat 422.868 kb on - strandat 422.900 kb on + strandat 422.932 kb on + strandat 422.936 kb on + strandat 422.936 kb on + strandat 423.090 kb on + strand, within ECD_00387at 423.105 kb on + strand, within ECD_00387at 423.129 kb on + strand, within ECD_00387at 423.129 kb on + strand, within ECD_00387at 423.251 kb on + strand, within ECD_00387at 423.395 kb on + strand, within ECD_00387at 423.477 kb on + strand, within ECD_00387at 423.478 kb on - strand, within ECD_00387at 423.500 kb on + strand, within ECD_00387at 423.500 kb on + strand, within ECD_00387at 423.604 kb on + strand, within ECD_00387at 423.839 kb on + strand, within ECD_00387at 424.127 kb on + strandat 424.250 kb on - strandat 424.279 kb on + strandat 424.291 kb on + strandat 424.315 kb on + strandat 424.367 kb on + strandat 424.460 kb on + strand, within ECD_00388at 424.460 kb on + strand, within ECD_00388at 424.470 kb on + strand, within ECD_00388at 424.576 kb on + strand, within ECD_00388at 424.576 kb on + strand, within ECD_00388at 424.580 kb on + strand, within ECD_00388at 424.581 kb on - strand, within ECD_00388at 424.591 kb on + strand, within ECD_00388at 424.591 kb on + strand, within ECD_00388at 424.627 kb on + strand, within ECD_00388at 424.627 kb on + strand, within ECD_00388at 424.628 kb on - strand, within ECD_00388at 424.631 kb on + strand, within ECD_00388at 424.631 kb on + strand, within ECD_00388at 424.631 kb on + strand, within ECD_00388at 424.884 kb on + strand, within ECD_00388at 424.884 kb on + strand, within ECD_00388at 425.010 kb on + strandat 425.010 kb on + strandat 425.010 kb on + strandat 425.014 kb on + strandat 425.036 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Arabinose
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421,873 + -4.7
421,874 - -3.3
421,874 - -3.4
421,942 + -0.9
422,032 + +1.3
422,066 + +1.1
422,066 + -1.3
422,067 - +1.2
422,076 + +0.4
422,175 + +0.6
422,220 + ECD_00386 0.20 +0.2
422,365 + ECD_00386 0.66 -0.2
422,366 - ECD_00386 0.66 -0.4
422,390 - ECD_00386 0.74 +0.4
422,390 - ECD_00386 0.74 +0.8
422,390 - ECD_00386 0.74 -0.7
422,393 + ECD_00386 0.75 -0.1
422,393 + ECD_00386 0.75 +0.6
422,394 - ECD_00386 0.75 +1.1
422,394 - ECD_00386 0.75 +0.3
422,394 - ECD_00386 0.75 -1.0
422,394 - ECD_00386 0.75 +0.5
422,398 + ECD_00386 0.76 +0.7
422,399 - ECD_00386 0.76 -0.6
422,399 - ECD_00386 0.76 -0.3
422,666 + -0.3
422,730 - -0.3
422,731 + -0.8
422,810 + -1.0
422,868 - +0.6
422,900 + -0.8
422,932 + +0.2
422,936 + -0.3
422,936 + -0.3
423,090 + ECD_00387 0.21 +0.6
423,105 + ECD_00387 0.22 -1.7
423,129 + ECD_00387 0.24 -1.0
423,129 + ECD_00387 0.24 -0.9
423,251 + ECD_00387 0.33 -0.4
423,395 + ECD_00387 0.44 -0.8
423,477 + ECD_00387 0.51 -0.8
423,478 - ECD_00387 0.51 -1.5
423,500 + ECD_00387 0.53 -0.9
423,500 + ECD_00387 0.53 -3.2
423,604 + ECD_00387 0.61 +0.1
423,839 + ECD_00387 0.79 -3.4
424,127 + -1.0
424,250 - -0.2
424,279 + -0.1
424,291 + +0.8
424,315 + +0.0
424,367 + -0.6
424,460 + ECD_00388 0.16 -2.4
424,460 + ECD_00388 0.16 -2.6
424,470 + ECD_00388 0.17 -4.3
424,576 + ECD_00388 0.34 -2.3
424,576 + ECD_00388 0.34 -2.3
424,580 + ECD_00388 0.35 -0.8
424,581 - ECD_00388 0.35 -2.1
424,591 + ECD_00388 0.37 -4.3
424,591 + ECD_00388 0.37 -1.7
424,627 + ECD_00388 0.43 -2.5
424,627 + ECD_00388 0.43 -1.3
424,628 - ECD_00388 0.43 +0.3
424,631 + ECD_00388 0.43 -2.6
424,631 + ECD_00388 0.43 -1.9
424,631 + ECD_00388 0.43 -2.1
424,884 + ECD_00388 0.84 -2.0
424,884 + ECD_00388 0.84 +1.0
425,010 + +0.4
425,010 + +0.7
425,010 + +1.2
425,014 + +1.2
425,036 + +0.1

Or see this region's nucleotide sequence