Experiment: Casamino-acids
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_00681 and ECD_00682 overlap by 7 nucleotides ECD_00682 and ECD_00683 overlap by 1 nucleotides ECD_00683 and ECD_00684 are separated by 15 nucleotides
ECD_00681: ECD_00681 - succinate dehydrogenase, membrane subunit, binds cytochrome b556, at 713,747 to 714,136
_00681
ECD_00682: ECD_00682 - succinate dehydrogenase, membrane subunit, binds cytochrome b556, at 714,130 to 714,477
_00682
ECD_00683: ECD_00683 - succinate dehydrogenase, flavoprotein subunit, at 714,477 to 716,243
_00683
ECD_00684: ECD_00684 - succinate dehydrogenase, FeS subunit, at 716,259 to 716,975
_00684
Position (kb) 714
715
716
717 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1
2 at 713.722 kb on + strand at 714.094 kb on + strand, within ECD_00681 at 714.094 kb on + strand, within ECD_00681 at 714.223 kb on + strand, within ECD_00682 at 714.223 kb on + strand, within ECD_00682 at 714.262 kb on + strand, within ECD_00682 at 714.263 kb on - strand, within ECD_00682 at 714.330 kb on + strand, within ECD_00682 at 714.684 kb on + strand, within ECD_00683 at 714.685 kb on - strand, within ECD_00683 at 714.708 kb on + strand, within ECD_00683 at 714.736 kb on - strand, within ECD_00683 at 714.743 kb on + strand, within ECD_00683 at 714.815 kb on + strand, within ECD_00683 at 714.819 kb on + strand, within ECD_00683 at 715.097 kb on + strand, within ECD_00683 at 715.657 kb on + strand, within ECD_00683 at 715.883 kb on + strand, within ECD_00683 at 715.883 kb on + strand, within ECD_00683 at 716.235 kb on - strand at 716.483 kb on + strand, within ECD_00684 at 716.616 kb on + strand, within ECD_00684 at 716.616 kb on + strand, within ECD_00684 at 716.705 kb on + strand, within ECD_00684 at 716.705 kb on + strand, within ECD_00684 at 716.902 kb on + strand, within ECD_00684 at 716.902 kb on + strand, within ECD_00684 at 717.141 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Casamino-acids remove 713,722 + -2.5 714,094 + ECD_00681 0.89 -0.9 714,094 + ECD_00681 0.89 -3.8 714,223 + ECD_00682 0.27 -3.0 714,223 + ECD_00682 0.27 -1.0 714,262 + ECD_00682 0.38 -2.1 714,263 - ECD_00682 0.38 -1.4 714,330 + ECD_00682 0.57 +1.4 714,684 + ECD_00683 0.12 -2.0 714,685 - ECD_00683 0.12 -2.1 714,708 + ECD_00683 0.13 -2.9 714,736 - ECD_00683 0.15 -1.9 714,743 + ECD_00683 0.15 -0.7 714,815 + ECD_00683 0.19 +0.8 714,819 + ECD_00683 0.19 +0.2 715,097 + ECD_00683 0.35 -4.5 715,657 + ECD_00683 0.67 -3.7 715,883 + ECD_00683 0.80 -3.8 715,883 + ECD_00683 0.80 -4.9 716,235 - -3.6 716,483 + ECD_00684 0.31 -1.9 716,616 + ECD_00684 0.50 +2.0 716,616 + ECD_00684 0.50 -3.4 716,705 + ECD_00684 0.62 -1.7 716,705 + ECD_00684 0.62 -4.1 716,902 + ECD_00684 0.90 -3.5 716,902 + ECD_00684 0.90 -2.3 717,141 + -1.4
Or see this region's nucleotide sequence