Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS28050

Experiment: adipate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRR42_RS28040 and RR42_RS28045 are separated by 146 nucleotidesRR42_RS28045 and RR42_RS28050 overlap by 8 nucleotidesRR42_RS28050 and RR42_RS28055 are separated by 38 nucleotides RR42_RS28040: RR42_RS28040 - acyl-CoA synthetase, at 1,651,338 to 1,653,443 _RS28040 RR42_RS28045: RR42_RS28045 - 3-oxoacyl-ACP reductase, at 1,653,590 to 1,654,339 _RS28045 RR42_RS28050: RR42_RS28050 - 3-hydroxypropionyl-CoA dehydratase, at 1,654,332 to 1,655,114 _RS28050 RR42_RS28055: RR42_RS28055 - acetyl-CoA acetyltransferase, at 1,655,153 to 1,656,349 _RS28055 Position (kb) 1654 1655 1656Strain fitness (log2 ratio) -2 -1 0 1at 1653.884 kb on + strand, within RR42_RS28045at 1654.184 kb on + strand, within RR42_RS28045at 1654.297 kb on + strandat 1655.246 kb on - strandat 1655.519 kb on + strand, within RR42_RS28055at 1655.519 kb on + strand, within RR42_RS28055at 1655.519 kb on + strand, within RR42_RS28055at 1655.519 kb on + strand, within RR42_RS28055at 1655.520 kb on - strand, within RR42_RS28055at 1655.522 kb on + strand, within RR42_RS28055at 1655.523 kb on - strand, within RR42_RS28055at 1655.523 kb on - strand, within RR42_RS28055at 1655.523 kb on - strand, within RR42_RS28055at 1655.669 kb on + strand, within RR42_RS28055at 1655.995 kb on + strand, within RR42_RS28055at 1655.995 kb on + strand, within RR42_RS28055at 1655.995 kb on + strand, within RR42_RS28055at 1655.995 kb on + strand, within RR42_RS28055at 1655.995 kb on + strand, within RR42_RS28055

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Per-strain Table

Position Strand Gene LocusTag Fraction adipate (C)
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1,653,884 + RR42_RS28045 0.39 +0.3
1,654,184 + RR42_RS28045 0.79 +1.1
1,654,297 + +1.4
1,655,246 - -0.2
1,655,519 + RR42_RS28055 0.31 +0.2
1,655,519 + RR42_RS28055 0.31 -0.0
1,655,519 + RR42_RS28055 0.31 +0.2
1,655,519 + RR42_RS28055 0.31 -0.7
1,655,520 - RR42_RS28055 0.31 +0.6
1,655,522 + RR42_RS28055 0.31 +0.2
1,655,523 - RR42_RS28055 0.31 -0.5
1,655,523 - RR42_RS28055 0.31 -2.0
1,655,523 - RR42_RS28055 0.31 -0.9
1,655,669 + RR42_RS28055 0.43 -2.2
1,655,995 + RR42_RS28055 0.70 +0.4
1,655,995 + RR42_RS28055 0.70 -0.4
1,655,995 + RR42_RS28055 0.70 +1.2
1,655,995 + RR42_RS28055 0.70 +0.1
1,655,995 + RR42_RS28055 0.70 -0.6

Or see this region's nucleotide sequence