Experiment: Fungal_growth_media_mCAFEs_v1_noCarbon with Supernatant; Trichoderma virens G41 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.67x; and D-Glucose 37 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS20120 and BWI76_RS20125 are separated by 425 nucleotides BWI76_RS20125 and BWI76_RS20130 are separated by 202 nucleotides
BWI76_RS20120: BWI76_RS20120 - fimbrial protein, at 4,215,280 to 4,215,807
_RS20120
BWI76_RS20125: BWI76_RS20125 - integrase, at 4,216,233 to 4,216,784
_RS20125
BWI76_RS20130: BWI76_RS20130 - NADH-quinone oxidoreductase subunit N, at 4,216,987 to 4,218,444
_RS20130
Position (kb)
4216
4217 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 4215.402 kb on + strand, within BWI76_RS20120 at 4215.414 kb on - strand, within BWI76_RS20120 at 4215.479 kb on + strand, within BWI76_RS20120 at 4215.487 kb on - strand, within BWI76_RS20120 at 4215.668 kb on + strand, within BWI76_RS20120 at 4215.676 kb on - strand, within BWI76_RS20120 at 4215.730 kb on - strand, within BWI76_RS20120 at 4215.730 kb on - strand, within BWI76_RS20120 at 4215.734 kb on + strand, within BWI76_RS20120 at 4215.745 kb on - strand, within BWI76_RS20120 at 4215.745 kb on - strand, within BWI76_RS20120 at 4215.745 kb on - strand, within BWI76_RS20120 at 4215.747 kb on + strand, within BWI76_RS20120 at 4215.747 kb on + strand, within BWI76_RS20120 at 4215.747 kb on + strand, within BWI76_RS20120 at 4215.752 kb on + strand, within BWI76_RS20120 at 4215.752 kb on + strand, within BWI76_RS20120 at 4215.752 kb on + strand, within BWI76_RS20120 at 4215.752 kb on + strand, within BWI76_RS20120 at 4215.752 kb on + strand, within BWI76_RS20120 at 4215.752 kb on + strand, within BWI76_RS20120 at 4215.752 kb on + strand, within BWI76_RS20120 at 4215.760 kb on - strand at 4215.760 kb on - strand at 4215.760 kb on - strand at 4215.760 kb on - strand at 4215.760 kb on - strand at 4215.760 kb on - strand at 4215.760 kb on - strand at 4215.760 kb on - strand at 4215.760 kb on - strand at 4215.760 kb on - strand at 4215.772 kb on + strand at 4215.780 kb on - strand at 4215.780 kb on - strand at 4215.780 kb on - strand at 4215.780 kb on - strand at 4215.780 kb on - strand at 4215.780 kb on - strand at 4215.780 kb on - strand at 4215.780 kb on - strand at 4215.788 kb on - strand at 4215.818 kb on + strand at 4215.818 kb on + strand at 4215.826 kb on - strand at 4215.848 kb on + strand at 4215.848 kb on + strand at 4215.848 kb on + strand at 4215.848 kb on + strand at 4215.848 kb on + strand at 4215.856 kb on - strand at 4215.856 kb on - strand at 4215.856 kb on - strand at 4215.856 kb on - strand at 4215.856 kb on - strand at 4215.856 kb on - strand at 4215.856 kb on - strand at 4215.885 kb on + strand at 4215.952 kb on + strand at 4216.028 kb on - strand at 4216.073 kb on - strand at 4216.074 kb on - strand at 4216.336 kb on + strand, within BWI76_RS20125 at 4216.357 kb on - strand, within BWI76_RS20125 at 4216.449 kb on + strand, within BWI76_RS20125 at 4216.529 kb on + strand, within BWI76_RS20125 at 4216.538 kb on + strand, within BWI76_RS20125 at 4216.539 kb on - strand, within BWI76_RS20125 at 4216.545 kb on - strand, within BWI76_RS20125 at 4216.546 kb on - strand, within BWI76_RS20125 at 4216.666 kb on - strand, within BWI76_RS20125 at 4216.719 kb on + strand, within BWI76_RS20125 at 4216.719 kb on + strand, within BWI76_RS20125 at 4216.723 kb on - strand, within BWI76_RS20125 at 4216.727 kb on - strand, within BWI76_RS20125 at 4216.728 kb on - strand, within BWI76_RS20125 at 4216.740 kb on + strand at 4216.741 kb on + strand at 4216.798 kb on + strand at 4216.798 kb on + strand at 4216.806 kb on - strand at 4216.808 kb on + strand at 4216.811 kb on - strand at 4216.958 kb on - strand at 4216.983 kb on - strand at 4216.990 kb on + strand at 4216.993 kb on - strand at 4216.993 kb on - strand at 4217.006 kb on - strand at 4217.010 kb on + strand at 4217.010 kb on + strand at 4217.015 kb on + strand at 4217.015 kb on + strand at 4217.020 kb on + strand at 4217.028 kb on - strand at 4217.042 kb on + strand at 4217.046 kb on + strand at 4217.050 kb on - strand at 4217.050 kb on - strand at 4217.090 kb on + strand at 4217.145 kb on + strand, within BWI76_RS20130 at 4217.145 kb on + strand, within BWI76_RS20130 at 4217.160 kb on - strand, within BWI76_RS20130 at 4217.427 kb on + strand, within BWI76_RS20130 at 4217.435 kb on - strand, within BWI76_RS20130
Per-strain Table
Position Strand Gene LocusTag Fraction Fungal_growth_media_mCAFEs_v1_noCarbon with Supernatant; Trichoderma virens G41 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.67x; and D-Glucose 37 mM remove 4,215,402 + BWI76_RS20120 0.23 +0.7 4,215,414 - BWI76_RS20120 0.25 -0.1 4,215,479 + BWI76_RS20120 0.38 -0.0 4,215,487 - BWI76_RS20120 0.39 -0.2 4,215,668 + BWI76_RS20120 0.73 +0.2 4,215,676 - BWI76_RS20120 0.75 -1.7 4,215,730 - BWI76_RS20120 0.85 -3.3 4,215,730 - BWI76_RS20120 0.85 +0.3 4,215,734 + BWI76_RS20120 0.86 +0.2 4,215,745 - BWI76_RS20120 0.88 +0.3 4,215,745 - BWI76_RS20120 0.88 +1.7 4,215,745 - BWI76_RS20120 0.88 +0.1 4,215,747 + BWI76_RS20120 0.88 -1.0 4,215,747 + BWI76_RS20120 0.88 -1.4 4,215,747 + BWI76_RS20120 0.88 -1.5 4,215,752 + BWI76_RS20120 0.89 -0.1 4,215,752 + BWI76_RS20120 0.89 +1.0 4,215,752 + BWI76_RS20120 0.89 +0.3 4,215,752 + BWI76_RS20120 0.89 -0.7 4,215,752 + BWI76_RS20120 0.89 -1.7 4,215,752 + BWI76_RS20120 0.89 -2.6 4,215,752 + BWI76_RS20120 0.89 +1.0 4,215,760 - +0.6 4,215,760 - +0.6 4,215,760 - +0.1 4,215,760 - +0.4 4,215,760 - -2.0 4,215,760 - -2.0 4,215,760 - +0.7 4,215,760 - +1.0 4,215,760 - -0.7 4,215,760 - -0.1 4,215,772 + +0.7 4,215,780 - -0.2 4,215,780 - +0.7 4,215,780 - -0.7 4,215,780 - +0.4 4,215,780 - -1.0 4,215,780 - -0.3 4,215,780 - -0.6 4,215,780 - -0.6 4,215,788 - -0.2 4,215,818 + -1.4 4,215,818 + -0.6 4,215,826 - +0.1 4,215,848 + -0.6 4,215,848 + +0.5 4,215,848 + -1.0 4,215,848 + +0.3 4,215,848 + -2.2 4,215,856 - -1.0 4,215,856 - +0.1 4,215,856 - +0.6 4,215,856 - -0.0 4,215,856 - +0.7 4,215,856 - -1.5 4,215,856 - -0.3 4,215,885 + -1.0 4,215,952 + -0.5 4,216,028 - -2.8 4,216,073 - +1.7 4,216,074 - -1.3 4,216,336 + BWI76_RS20125 0.19 -0.5 4,216,357 - BWI76_RS20125 0.22 -1.0 4,216,449 + BWI76_RS20125 0.39 -1.6 4,216,529 + BWI76_RS20125 0.54 -1.0 4,216,538 + BWI76_RS20125 0.55 -1.6 4,216,539 - BWI76_RS20125 0.55 -0.7 4,216,545 - BWI76_RS20125 0.57 -1.1 4,216,546 - BWI76_RS20125 0.57 -1.0 4,216,666 - BWI76_RS20125 0.78 -0.9 4,216,719 + BWI76_RS20125 0.88 -1.3 4,216,719 + BWI76_RS20125 0.88 -0.3 4,216,723 - BWI76_RS20125 0.89 -0.9 4,216,727 - BWI76_RS20125 0.89 +0.6 4,216,728 - BWI76_RS20125 0.90 -1.1 4,216,740 + -1.3 4,216,741 + +0.0 4,216,798 + +0.7 4,216,798 + -0.0 4,216,806 - -0.5 4,216,808 + +0.2 4,216,811 - +2.3 4,216,958 - -1.3 4,216,983 - +1.0 4,216,990 + +1.5 4,216,993 - +0.0 4,216,993 - +0.1 4,217,006 - -0.2 4,217,010 + +0.4 4,217,010 + +1.0 4,217,015 + -1.7 4,217,015 + -0.3 4,217,020 + -1.0 4,217,028 - -0.3 4,217,042 + +0.1 4,217,046 + +0.4 4,217,050 - -0.1 4,217,050 - +0.5 4,217,090 + +0.8 4,217,145 + BWI76_RS20130 0.11 -0.8 4,217,145 + BWI76_RS20130 0.11 -0.1 4,217,160 - BWI76_RS20130 0.12 +0.5 4,217,427 + BWI76_RS20130 0.30 -0.3 4,217,435 - BWI76_RS20130 0.31 -1.1
Or see this region's nucleotide sequence