Strain Fitness in Marinobacter adhaerens HP15 around HP15_424

Experiment: Mixed culture; Prochlorococcus marinus str. MED4 10:1 starting OD to HP15

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHP15_422 and HP15_423 overlap by 11 nucleotidesHP15_423 and HP15_424 overlap by 4 nucleotidesHP15_424 and HP15_425 are separated by 62 nucleotides HP15_422: HP15_422 - protein containing prepilin-type cleavage/methylation, N-terminal domains, at 417,062 to 417,847 _422 HP15_423: HP15_423 - conserved hypothetical protein, at 417,837 to 418,250 _423 HP15_424: HP15_424 - MshQ-like protein, at 418,247 to 422,671 _424 HP15_425: HP15_425 - two-component response regulator NtrC, at 422,734 to 424,161 _425 Position (kb) 418 419 420 421 422 423Strain fitness (log2 ratio) -2 -1 0 1 2 3at 417.299 kb on - strand, within HP15_422at 417.299 kb on - strand, within HP15_422at 417.327 kb on + strand, within HP15_422at 417.421 kb on - strand, within HP15_422at 417.434 kb on - strand, within HP15_422at 417.489 kb on - strand, within HP15_422at 417.750 kb on - strand, within HP15_422at 417.771 kb on + strandat 417.771 kb on + strandat 417.841 kb on + strandat 417.849 kb on - strandat 417.874 kb on + strandat 418.005 kb on + strand, within HP15_423at 418.116 kb on + strand, within HP15_423at 418.194 kb on - strand, within HP15_423at 418.194 kb on - strand, within HP15_423at 418.196 kb on + strand, within HP15_423at 418.380 kb on - strandat 418.387 kb on + strandat 418.387 kb on + strandat 418.415 kb on + strandat 418.434 kb on + strandat 418.439 kb on + strandat 418.439 kb on + strandat 418.439 kb on + strandat 418.442 kb on - strandat 418.447 kb on - strandat 418.447 kb on - strandat 418.447 kb on - strandat 418.457 kb on - strandat 418.457 kb on - strandat 418.485 kb on + strandat 418.517 kb on - strandat 418.692 kb on + strand, within HP15_424at 418.762 kb on + strand, within HP15_424at 418.814 kb on - strand, within HP15_424at 419.040 kb on + strand, within HP15_424at 419.068 kb on + strand, within HP15_424at 419.108 kb on - strand, within HP15_424at 419.218 kb on - strand, within HP15_424at 419.236 kb on - strand, within HP15_424at 419.253 kb on - strand, within HP15_424at 419.536 kb on - strand, within HP15_424at 419.598 kb on + strand, within HP15_424at 419.662 kb on + strand, within HP15_424at 419.665 kb on - strand, within HP15_424at 419.879 kb on + strand, within HP15_424at 419.879 kb on + strand, within HP15_424at 419.879 kb on + strand, within HP15_424at 419.901 kb on + strand, within HP15_424at 419.953 kb on - strand, within HP15_424at 420.004 kb on - strand, within HP15_424at 420.092 kb on - strand, within HP15_424at 420.108 kb on - strand, within HP15_424at 420.123 kb on - strand, within HP15_424at 420.182 kb on - strand, within HP15_424at 420.239 kb on - strand, within HP15_424at 420.239 kb on - strand, within HP15_424at 420.275 kb on - strand, within HP15_424at 420.368 kb on - strand, within HP15_424at 420.394 kb on + strand, within HP15_424at 420.486 kb on - strand, within HP15_424at 420.486 kb on - strand, within HP15_424at 420.670 kb on - strand, within HP15_424at 420.690 kb on + strand, within HP15_424at 420.690 kb on + strand, within HP15_424at 420.695 kb on + strand, within HP15_424at 420.698 kb on - strand, within HP15_424at 420.703 kb on - strand, within HP15_424at 420.725 kb on - strand, within HP15_424at 420.782 kb on + strand, within HP15_424at 420.915 kb on + strand, within HP15_424at 421.031 kb on + strand, within HP15_424at 421.211 kb on - strand, within HP15_424at 421.211 kb on - strand, within HP15_424at 421.262 kb on - strand, within HP15_424at 421.308 kb on + strand, within HP15_424at 421.386 kb on - strand, within HP15_424at 421.435 kb on - strand, within HP15_424at 421.435 kb on - strand, within HP15_424at 421.437 kb on + strand, within HP15_424at 421.527 kb on - strand, within HP15_424at 421.533 kb on - strand, within HP15_424at 421.572 kb on + strand, within HP15_424at 421.580 kb on - strand, within HP15_424at 421.756 kb on - strand, within HP15_424at 421.774 kb on + strand, within HP15_424at 421.774 kb on + strand, within HP15_424at 421.839 kb on + strand, within HP15_424at 421.858 kb on - strand, within HP15_424at 421.873 kb on - strand, within HP15_424at 421.949 kb on - strand, within HP15_424at 422.019 kb on + strand, within HP15_424at 422.085 kb on - strand, within HP15_424at 422.210 kb on - strand, within HP15_424at 422.291 kb on + strandat 422.328 kb on - strandat 422.446 kb on + strandat 422.451 kb on + strandat 422.459 kb on - strandat 422.627 kb on - strandat 422.714 kb on + strandat 423.105 kb on - strand, within HP15_425at 423.112 kb on + strand, within HP15_425at 423.212 kb on + strand, within HP15_425at 423.229 kb on - strand, within HP15_425at 423.230 kb on - strand, within HP15_425at 423.406 kb on - strand, within HP15_425at 423.565 kb on + strand, within HP15_425at 423.565 kb on + strand, within HP15_425at 423.573 kb on - strand, within HP15_425at 423.573 kb on - strand, within HP15_425

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Per-strain Table

Position Strand Gene LocusTag Fraction Mixed culture; Prochlorococcus marinus str. MED4 10:1 starting OD to HP15
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417,299 - HP15_422 0.30 +1.8
417,299 - HP15_422 0.30 -1.1
417,327 + HP15_422 0.34 -1.6
417,421 - HP15_422 0.46 +2.4
417,434 - HP15_422 0.47 +2.6
417,489 - HP15_422 0.54 +2.1
417,750 - HP15_422 0.88 -1.1
417,771 + +0.6
417,771 + +1.3
417,841 + -0.4
417,849 - -0.1
417,874 + +2.3
418,005 + HP15_423 0.41 +1.7
418,116 + HP15_423 0.67 +0.8
418,194 - HP15_423 0.86 +0.0
418,194 - HP15_423 0.86 +0.1
418,196 + HP15_423 0.87 +2.2
418,380 - +0.9
418,387 + +0.2
418,387 + -0.0
418,415 + +2.2
418,434 + -0.3
418,439 + +2.2
418,439 + -1.1
418,439 + +0.2
418,442 - +2.8
418,447 - +0.1
418,447 - +1.3
418,447 - +0.7
418,457 - +0.8
418,457 - +0.5
418,485 + +1.3
418,517 - +0.8
418,692 + HP15_424 0.10 +1.7
418,762 + HP15_424 0.12 +1.3
418,814 - HP15_424 0.13 +0.9
419,040 + HP15_424 0.18 -0.1
419,068 + HP15_424 0.19 +0.3
419,108 - HP15_424 0.19 +0.2
419,218 - HP15_424 0.22 +0.5
419,236 - HP15_424 0.22 +0.0
419,253 - HP15_424 0.23 +0.1
419,536 - HP15_424 0.29 +2.1
419,598 + HP15_424 0.31 +2.1
419,662 + HP15_424 0.32 +2.0
419,665 - HP15_424 0.32 +1.6
419,879 + HP15_424 0.37 -2.0
419,879 + HP15_424 0.37 +1.8
419,879 + HP15_424 0.37 +1.9
419,901 + HP15_424 0.37 -0.3
419,953 - HP15_424 0.39 +2.7
420,004 - HP15_424 0.40 -0.1
420,092 - HP15_424 0.42 +1.4
420,108 - HP15_424 0.42 -0.6
420,123 - HP15_424 0.42 +2.0
420,182 - HP15_424 0.44 -0.6
420,239 - HP15_424 0.45 +0.5
420,239 - HP15_424 0.45 +0.9
420,275 - HP15_424 0.46 +1.4
420,368 - HP15_424 0.48 +2.7
420,394 + HP15_424 0.49 +1.0
420,486 - HP15_424 0.51 +1.8
420,486 - HP15_424 0.51 +2.0
420,670 - HP15_424 0.55 +1.3
420,690 + HP15_424 0.55 +0.6
420,690 + HP15_424 0.55 -0.0
420,695 + HP15_424 0.55 +0.6
420,698 - HP15_424 0.55 +0.3
420,703 - HP15_424 0.56 +0.7
420,725 - HP15_424 0.56 +1.3
420,782 + HP15_424 0.57 +1.8
420,915 + HP15_424 0.60 +1.6
421,031 + HP15_424 0.63 +1.4
421,211 - HP15_424 0.67 +0.4
421,211 - HP15_424 0.67 +2.2
421,262 - HP15_424 0.68 +2.5
421,308 + HP15_424 0.69 -0.6
421,386 - HP15_424 0.71 +0.7
421,435 - HP15_424 0.72 -1.2
421,435 - HP15_424 0.72 +0.7
421,437 + HP15_424 0.72 -0.2
421,527 - HP15_424 0.74 +1.4
421,533 - HP15_424 0.74 -0.1
421,572 + HP15_424 0.75 +1.9
421,580 - HP15_424 0.75 +0.3
421,756 - HP15_424 0.79 +2.3
421,774 + HP15_424 0.80 +1.5
421,774 + HP15_424 0.80 +1.7
421,839 + HP15_424 0.81 +0.7
421,858 - HP15_424 0.82 +0.9
421,873 - HP15_424 0.82 +1.5
421,949 - HP15_424 0.84 +2.2
422,019 + HP15_424 0.85 +2.4
422,085 - HP15_424 0.87 +0.2
422,210 - HP15_424 0.90 +0.4
422,291 + +1.4
422,328 - +1.6
422,446 + +2.3
422,451 + +0.6
422,459 - -0.3
422,627 - -0.0
422,714 + -0.4
423,105 - HP15_425 0.26 -1.3
423,112 + HP15_425 0.26 +1.2
423,212 + HP15_425 0.33 +0.5
423,229 - HP15_425 0.35 -0.2
423,230 - HP15_425 0.35 -0.4
423,406 - HP15_425 0.47 -0.5
423,565 + HP15_425 0.58 -0.9
423,565 + HP15_425 0.58 +0.7
423,573 - HP15_425 0.59 +2.0
423,573 - HP15_425 0.59 -1.0

Or see this region's nucleotide sequence