Experiment: 4-Hydroxybenzoic Acid (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu3715 and Atu3716 are separated by 9 nucleotides Atu3716 and Atu3717 are separated by 58 nucleotides Atu3717 and Atu3718 are separated by 261 nucleotides Atu3718 and Atu3719 are separated by 124 nucleotides
Atu3715: Atu3715 - hypothetical protein, at 797,692 to 798,846
Atu3715
Atu3716: Atu3716 - tolR protein, at 798,856 to 799,314
Atu3716
Atu3717: Atu3717 - tolQ protein, at 799,373 to 800,092
Atu3717
Atu3718: Atu3718 - hypothetical protein, at 800,354 to 800,794
Atu3718
Atu3719: Atu3719 - MutT/nudix family protein, at 800,919 to 801,446
Atu3719
Position (kb) 799
800
801 Strain fitness (log2 ratio) -2
-1
0
1 at 800.295 kb on + strand at 800.305 kb on + strand at 800.397 kb on + strand at 800.402 kb on + strand, within Atu3718 at 800.429 kb on - strand, within Atu3718 at 800.449 kb on + strand, within Atu3718 at 800.459 kb on + strand, within Atu3718 at 800.540 kb on - strand, within Atu3718 at 800.585 kb on + strand, within Atu3718 at 800.650 kb on - strand, within Atu3718 at 800.688 kb on + strand, within Atu3718 at 800.744 kb on - strand, within Atu3718 at 800.744 kb on - strand, within Atu3718 at 800.753 kb on + strand at 800.753 kb on + strand at 800.853 kb on - strand at 800.858 kb on - strand at 800.957 kb on + strand at 800.957 kb on - strand at 800.965 kb on - strand at 801.049 kb on - strand, within Atu3719
Per-strain Table
Position Strand Gene LocusTag Fraction 4-Hydroxybenzoic Acid (C) remove 800,295 + +0.1 800,305 + +1.6 800,397 + -0.6 800,402 + Atu3718 0.11 -1.4 800,429 - Atu3718 0.17 -2.2 800,449 + Atu3718 0.22 -1.1 800,459 + Atu3718 0.24 -1.6 800,540 - Atu3718 0.42 +0.0 800,585 + Atu3718 0.52 +0.3 800,650 - Atu3718 0.67 +1.0 800,688 + Atu3718 0.76 -1.9 800,744 - Atu3718 0.88 -0.6 800,744 - Atu3718 0.88 -1.1 800,753 + -1.7 800,753 + -0.2 800,853 - -0.3 800,858 - -0.2 800,957 + +0.6 800,957 - -1.5 800,965 - -0.4 801,049 - Atu3719 0.25 -0.2
Or see this region's nucleotide sequence