Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_1345

Experiment: KB with Aristolochic Acid 10 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsyr_1344 and Psyr_1345 are separated by 205 nucleotidesPsyr_1345 and Psyr_1346 overlap by 1 nucleotidesPsyr_1346 and Psyr_1347 are separated by 16 nucleotides Psyr_1344: Psyr_1344 - translation elongation factor Ts (EF-Ts), at 1,524,151 to 1,525,014 _1344 Psyr_1345: Psyr_1345 - uridylate kinase, at 1,525,220 to 1,525,960 _1345 Psyr_1346: Psyr_1346 - ribosome recycling factor, at 1,525,960 to 1,526,517 _1346 Psyr_1347: Psyr_1347 - Undecaprenyl pyrophosphate synthetase, at 1,526,534 to 1,527,289 _1347 Position (kb) 1525 1526Strain fitness (log2 ratio) -1 0 1at 1525.151 kb on + strandat 1525.173 kb on + strandat 1525.173 kb on + strandat 1526.515 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction KB with Aristolochic Acid 10 mM
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1,525,151 + -0.2
1,525,173 + +1.2
1,525,173 + -1.1
1,526,515 + -1.0

Or see this region's nucleotide sequence