Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_0488

Experiment: KB with Aristolochic Acid 10 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsyr_0487 and Psyr_0488 are separated by 254 nucleotidesPsyr_0488 and Psyr_0489 are separated by 46 nucleotidesPsyr_0489 and Psyr_0490 are separated by 14 nucleotides Psyr_0487: Psyr_0487 - glutathione synthase, at 524,260 to 525,219 _0487 Psyr_0488: Psyr_0488 - Response regulator receiver, at 525,474 to 525,884 _0488 Psyr_0489: Psyr_0489 - Response regulator receiver, at 525,931 to 526,296 _0489 Psyr_0490: Psyr_0490 - CheW-like protein, at 526,311 to 526,850 _0490 Position (kb) 525 526Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 524.510 kb on - strand, within Psyr_0487at 525.107 kb on + strand, within Psyr_0487at 525.107 kb on + strand, within Psyr_0487at 525.107 kb on + strand, within Psyr_0487at 525.107 kb on + strand, within Psyr_0487at 525.107 kb on + strand, within Psyr_0487at 525.108 kb on - strand, within Psyr_0487at 525.108 kb on - strand, within Psyr_0487at 525.108 kb on - strand, within Psyr_0487at 525.108 kb on - strand, within Psyr_0487at 525.227 kb on - strandat 525.360 kb on + strandat 525.360 kb on + strandat 525.360 kb on + strandat 525.637 kb on + strand, within Psyr_0488at 525.637 kb on + strand, within Psyr_0488at 525.877 kb on + strandat 525.877 kb on + strandat 525.877 kb on + strandat 525.877 kb on + strandat 525.877 kb on + strandat 525.877 kb on + strandat 525.877 kb on + strandat 525.877 kb on + strandat 525.877 kb on + strandat 525.877 kb on + strandat 525.877 kb on + strandat 525.877 kb on + strandat 525.878 kb on - strandat 525.878 kb on - strandat 525.878 kb on - strandat 525.878 kb on - strandat 525.878 kb on - strandat 525.878 kb on - strandat 525.878 kb on - strandat 525.878 kb on - strandat 525.878 kb on - strandat 525.879 kb on - strandat 525.900 kb on + strandat 525.900 kb on + strandat 525.900 kb on + strandat 525.900 kb on + strandat 525.912 kb on - strandat 525.912 kb on - strandat 525.973 kb on + strand, within Psyr_0489at 526.156 kb on - strand, within Psyr_0489at 526.651 kb on + strand, within Psyr_0490at 526.651 kb on + strand, within Psyr_0490at 526.651 kb on + strand, within Psyr_0490at 526.651 kb on + strand, within Psyr_0490at 526.651 kb on + strand, within Psyr_0490at 526.651 kb on + strand, within Psyr_0490at 526.651 kb on + strand, within Psyr_0490at 526.651 kb on + strand, within Psyr_0490at 526.652 kb on - strand, within Psyr_0490at 526.652 kb on - strand, within Psyr_0490at 526.652 kb on - strand, within Psyr_0490at 526.652 kb on - strand, within Psyr_0490at 526.652 kb on - strand, within Psyr_0490at 526.745 kb on + strand, within Psyr_0490at 526.745 kb on + strand, within Psyr_0490at 526.746 kb on - strand, within Psyr_0490at 526.746 kb on - strand, within Psyr_0490at 526.773 kb on - strand, within Psyr_0490at 526.848 kb on + strandat 526.848 kb on + strandat 526.849 kb on - strandat 526.849 kb on - strandat 526.849 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction KB with Aristolochic Acid 10 mM
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524,510 - Psyr_0487 0.26 -1.4
525,107 + Psyr_0487 0.88 +0.5
525,107 + Psyr_0487 0.88 -0.5
525,107 + Psyr_0487 0.88 -0.8
525,107 + Psyr_0487 0.88 -1.7
525,107 + Psyr_0487 0.88 -1.3
525,108 - Psyr_0487 0.88 -0.8
525,108 - Psyr_0487 0.88 -0.1
525,108 - Psyr_0487 0.88 -2.5
525,108 - Psyr_0487 0.88 +0.2
525,227 - -2.1
525,360 + -0.6
525,360 + +0.0
525,360 + +1.5
525,637 + Psyr_0488 0.40 -0.3
525,637 + Psyr_0488 0.40 +0.3
525,877 + +0.6
525,877 + -0.2
525,877 + +0.9
525,877 + +0.6
525,877 + -1.0
525,877 + +1.1
525,877 + +1.5
525,877 + -0.8
525,877 + -2.8
525,877 + -0.5
525,877 + +0.4
525,877 + -0.2
525,878 - +0.2
525,878 - -0.2
525,878 - -1.3
525,878 - +0.5
525,878 - -1.5
525,878 - -0.1
525,878 - -0.1
525,878 - -0.6
525,878 - -3.0
525,879 - -0.4
525,900 + -0.8
525,900 + +0.8
525,900 + -0.2
525,900 + -0.8
525,912 - -2.6
525,912 - -1.7
525,973 + Psyr_0489 0.11 -0.8
526,156 - Psyr_0489 0.61 -2.3
526,651 + Psyr_0490 0.63 -0.2
526,651 + Psyr_0490 0.63 -0.2
526,651 + Psyr_0490 0.63 +1.0
526,651 + Psyr_0490 0.63 +0.7
526,651 + Psyr_0490 0.63 +0.9
526,651 + Psyr_0490 0.63 -0.0
526,651 + Psyr_0490 0.63 -2.2
526,651 + Psyr_0490 0.63 -0.5
526,652 - Psyr_0490 0.63 -0.2
526,652 - Psyr_0490 0.63 -2.3
526,652 - Psyr_0490 0.63 +1.8
526,652 - Psyr_0490 0.63 -1.9
526,652 - Psyr_0490 0.63 -3.4
526,745 + Psyr_0490 0.80 +1.5
526,745 + Psyr_0490 0.80 -0.8
526,746 - Psyr_0490 0.81 -0.5
526,746 - Psyr_0490 0.81 -0.5
526,773 - Psyr_0490 0.86 -1.3
526,848 + -2.6
526,848 + -0.5
526,849 - -1.6
526,849 - -1.2
526,849 - +0.3

Or see this region's nucleotide sequence