Experiment: malate (C) and Ammonium chloride (N); with MOPS
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PFLU_RS01400 and PFLU_RS01405 overlap by 4 nucleotides PFLU_RS01405 and PFLU_RS01410 are separated by 36 nucleotides PFLU_RS01410 and PFLU_RS01415 overlap by 4 nucleotides
PFLU_RS01400: PFLU_RS01400 - sigma-54-dependent Fis family transcriptional regulator, at 309,839 to 311,215
_RS01400
PFLU_RS01405: PFLU_RS01405 - sensor histidine kinase, at 311,212 to 313,020
_RS01405
PFLU_RS01410: PFLU_RS01410 - dTDP-4-dehydrorhamnose reductase, at 313,057 to 313,926
_RS01410
PFLU_RS01415: PFLU_RS01415 - dTDP-4-dehydrorhamnose 3,5-epimerase, at 313,923 to 314,468
_RS01415
Position (kb) 311
312
313
314 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 310.296 kb on + strand, within PFLU_RS01400 at 310.297 kb on - strand, within PFLU_RS01400 at 310.299 kb on + strand, within PFLU_RS01400 at 310.299 kb on + strand, within PFLU_RS01400 at 310.299 kb on + strand, within PFLU_RS01400 at 310.299 kb on + strand, within PFLU_RS01400 at 310.299 kb on + strand, within PFLU_RS01400 at 310.299 kb on + strand, within PFLU_RS01400 at 310.299 kb on + strand, within PFLU_RS01400 at 310.299 kb on + strand, within PFLU_RS01400 at 310.299 kb on + strand, within PFLU_RS01400 at 310.299 kb on + strand, within PFLU_RS01400 at 310.299 kb on + strand, within PFLU_RS01400 at 310.299 kb on + strand, within PFLU_RS01400 at 310.299 kb on + strand, within PFLU_RS01400 at 310.300 kb on - strand, within PFLU_RS01400 at 310.300 kb on - strand, within PFLU_RS01400 at 310.300 kb on - strand, within PFLU_RS01400 at 310.300 kb on - strand, within PFLU_RS01400 at 310.300 kb on - strand, within PFLU_RS01400 at 310.300 kb on - strand, within PFLU_RS01400 at 310.300 kb on - strand, within PFLU_RS01400 at 310.300 kb on - strand, within PFLU_RS01400 at 310.300 kb on - strand, within PFLU_RS01400 at 310.300 kb on - strand, within PFLU_RS01400 at 310.300 kb on - strand, within PFLU_RS01400 at 310.300 kb on - strand, within PFLU_RS01400 at 310.300 kb on - strand, within PFLU_RS01400 at 310.300 kb on - strand, within PFLU_RS01400 at 310.300 kb on - strand, within PFLU_RS01400 at 310.300 kb on - strand, within PFLU_RS01400 at 310.300 kb on - strand, within PFLU_RS01400 at 310.448 kb on + strand, within PFLU_RS01400 at 310.448 kb on + strand, within PFLU_RS01400 at 310.448 kb on + strand, within PFLU_RS01400 at 310.448 kb on + strand, within PFLU_RS01400 at 310.448 kb on + strand, within PFLU_RS01400 at 310.448 kb on + strand, within PFLU_RS01400 at 310.449 kb on - strand, within PFLU_RS01400 at 310.449 kb on - strand, within PFLU_RS01400 at 310.449 kb on - strand, within PFLU_RS01400 at 310.449 kb on - strand, within PFLU_RS01400 at 310.449 kb on - strand, within PFLU_RS01400 at 310.449 kb on - strand, within PFLU_RS01400 at 310.449 kb on - strand, within PFLU_RS01400 at 310.449 kb on - strand, within PFLU_RS01400 at 310.628 kb on - strand, within PFLU_RS01400 at 310.911 kb on + strand, within PFLU_RS01400 at 311.204 kb on - strand at 311.215 kb on + strand at 311.215 kb on + strand at 311.215 kb on + strand at 311.215 kb on + strand at 311.215 kb on + strand at 311.215 kb on + strand at 311.215 kb on + strand at 311.215 kb on + strand at 311.215 kb on + strand at 311.215 kb on + strand at 311.215 kb on + strand at 311.215 kb on + strand at 311.215 kb on + strand at 311.215 kb on + strand at 311.215 kb on + strand at 311.215 kb on + strand at 311.215 kb on + strand at 311.215 kb on + strand at 311.215 kb on + strand at 311.215 kb on + strand at 311.215 kb on + strand at 311.215 kb on + strand at 311.215 kb on + strand at 311.215 kb on + strand at 311.216 kb on - strand at 311.216 kb on - strand at 311.216 kb on - strand at 311.216 kb on - strand at 311.216 kb on - strand at 311.216 kb on - strand at 311.216 kb on - strand at 311.216 kb on - strand at 311.216 kb on - strand at 311.216 kb on - strand at 311.216 kb on - strand at 311.216 kb on - strand at 311.216 kb on - strand at 311.216 kb on - strand at 311.216 kb on - strand at 311.216 kb on - strand at 311.216 kb on - strand at 311.216 kb on - strand at 311.216 kb on - strand at 311.216 kb on - strand at 311.216 kb on - strand at 311.216 kb on - strand at 311.216 kb on - strand at 311.216 kb on - strand at 311.394 kb on + strand, within PFLU_RS01405 at 311.394 kb on + strand, within PFLU_RS01405 at 311.395 kb on - strand, within PFLU_RS01405 at 311.395 kb on - strand, within PFLU_RS01405 at 311.395 kb on - strand, within PFLU_RS01405 at 311.396 kb on + strand, within PFLU_RS01405 at 311.396 kb on + strand, within PFLU_RS01405 at 311.396 kb on + strand, within PFLU_RS01405 at 311.396 kb on + strand, within PFLU_RS01405 at 311.396 kb on + strand, within PFLU_RS01405 at 311.396 kb on + strand, within PFLU_RS01405 at 311.396 kb on + strand, within PFLU_RS01405 at 311.396 kb on + strand, within PFLU_RS01405 at 311.396 kb on + strand, within PFLU_RS01405 at 311.396 kb on + strand, within PFLU_RS01405 at 311.396 kb on + strand, within PFLU_RS01405 at 311.396 kb on + strand, within PFLU_RS01405 at 311.396 kb on + strand, within PFLU_RS01405 at 311.396 kb on + strand, within PFLU_RS01405 at 311.397 kb on - strand, within PFLU_RS01405 at 311.397 kb on - strand, within PFLU_RS01405 at 311.397 kb on - strand, within PFLU_RS01405 at 311.397 kb on - strand, within PFLU_RS01405 at 311.397 kb on - strand, within PFLU_RS01405 at 311.397 kb on - strand, within PFLU_RS01405 at 311.397 kb on - strand, within PFLU_RS01405 at 311.397 kb on - strand, within PFLU_RS01405 at 311.397 kb on - strand, within PFLU_RS01405 at 311.397 kb on - strand, within PFLU_RS01405 at 311.397 kb on - strand, within PFLU_RS01405 at 311.459 kb on + strand, within PFLU_RS01405 at 311.460 kb on - strand, within PFLU_RS01405 at 311.460 kb on - strand, within PFLU_RS01405 at 311.460 kb on - strand, within PFLU_RS01405 at 312.101 kb on + strand, within PFLU_RS01405 at 312.101 kb on + strand, within PFLU_RS01405 at 312.101 kb on + strand, within PFLU_RS01405 at 312.102 kb on - strand, within PFLU_RS01405 at 312.102 kb on - strand, within PFLU_RS01405 at 312.180 kb on + strand, within PFLU_RS01405 at 312.180 kb on + strand, within PFLU_RS01405 at 312.180 kb on + strand, within PFLU_RS01405 at 312.180 kb on + strand, within PFLU_RS01405 at 312.180 kb on + strand, within PFLU_RS01405 at 312.180 kb on + strand, within PFLU_RS01405 at 312.180 kb on + strand, within PFLU_RS01405 at 312.181 kb on - strand, within PFLU_RS01405 at 312.181 kb on - strand, within PFLU_RS01405 at 312.411 kb on + strand, within PFLU_RS01405 at 312.412 kb on - strand, within PFLU_RS01405 at 312.536 kb on + strand, within PFLU_RS01405 at 312.536 kb on + strand, within PFLU_RS01405 at 312.536 kb on + strand, within PFLU_RS01405 at 312.536 kb on + strand, within PFLU_RS01405 at 312.537 kb on - strand, within PFLU_RS01405 at 312.537 kb on - strand, within PFLU_RS01405 at 312.537 kb on - strand, within PFLU_RS01405 at 312.608 kb on + strand, within PFLU_RS01405 at 312.698 kb on + strand, within PFLU_RS01405 at 312.698 kb on + strand, within PFLU_RS01405 at 312.698 kb on + strand, within PFLU_RS01405 at 312.698 kb on + strand, within PFLU_RS01405 at 312.698 kb on + strand, within PFLU_RS01405 at 312.698 kb on + strand, within PFLU_RS01405 at 312.699 kb on - strand, within PFLU_RS01405 at 312.699 kb on - strand, within PFLU_RS01405 at 312.699 kb on - strand, within PFLU_RS01405 at 312.699 kb on - strand, within PFLU_RS01405 at 312.699 kb on - strand, within PFLU_RS01405 at 312.699 kb on - strand, within PFLU_RS01405 at 312.699 kb on - strand, within PFLU_RS01405 at 312.869 kb on + strand at 312.869 kb on + strand at 312.869 kb on + strand at 312.869 kb on + strand at 312.870 kb on - strand at 312.870 kb on - strand at 312.915 kb on - strand at 312.917 kb on + strand at 312.917 kb on + strand at 312.918 kb on - strand at 312.918 kb on - strand at 312.918 kb on - strand at 312.999 kb on + strand at 313.052 kb on + strand at 313.052 kb on + strand at 313.053 kb on - strand at 313.053 kb on - strand at 313.053 kb on - strand at 313.053 kb on - strand at 313.053 kb on - strand at 313.053 kb on - strand at 313.053 kb on - strand at 313.053 kb on - strand at 313.058 kb on + strand at 313.058 kb on + strand at 313.058 kb on + strand at 313.059 kb on - strand at 313.059 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction malate (C) and Ammonium chloride (N); with MOPS remove 310,296 + PFLU_RS01400 0.33 -3.5 310,297 - PFLU_RS01400 0.33 -2.4 310,299 + PFLU_RS01400 0.33 -2.5 310,299 + PFLU_RS01400 0.33 -1.3 310,299 + PFLU_RS01400 0.33 +0.1 310,299 + PFLU_RS01400 0.33 -0.4 310,299 + PFLU_RS01400 0.33 -1.1 310,299 + PFLU_RS01400 0.33 -1.5 310,299 + PFLU_RS01400 0.33 -0.4 310,299 + PFLU_RS01400 0.33 -2.6 310,299 + PFLU_RS01400 0.33 -1.1 310,299 + PFLU_RS01400 0.33 -1.8 310,299 + PFLU_RS01400 0.33 -1.4 310,299 + PFLU_RS01400 0.33 -1.0 310,299 + PFLU_RS01400 0.33 -1.8 310,300 - PFLU_RS01400 0.33 -0.5 310,300 - PFLU_RS01400 0.33 -2.3 310,300 - PFLU_RS01400 0.33 -0.3 310,300 - PFLU_RS01400 0.33 -2.8 310,300 - PFLU_RS01400 0.33 -1.5 310,300 - PFLU_RS01400 0.33 -1.9 310,300 - PFLU_RS01400 0.33 -2.8 310,300 - PFLU_RS01400 0.33 -0.5 310,300 - PFLU_RS01400 0.33 -2.5 310,300 - PFLU_RS01400 0.33 +0.5 310,300 - PFLU_RS01400 0.33 -1.0 310,300 - PFLU_RS01400 0.33 -1.4 310,300 - PFLU_RS01400 0.33 -0.3 310,300 - PFLU_RS01400 0.33 -3.6 310,300 - PFLU_RS01400 0.33 -1.2 310,300 - PFLU_RS01400 0.33 -1.6 310,300 - PFLU_RS01400 0.33 -1.2 310,448 + PFLU_RS01400 0.44 -2.4 310,448 + PFLU_RS01400 0.44 -1.7 310,448 + PFLU_RS01400 0.44 -2.9 310,448 + PFLU_RS01400 0.44 -1.0 310,448 + PFLU_RS01400 0.44 -1.5 310,448 + PFLU_RS01400 0.44 -2.0 310,449 - PFLU_RS01400 0.44 -1.7 310,449 - PFLU_RS01400 0.44 -0.5 310,449 - PFLU_RS01400 0.44 -1.0 310,449 - PFLU_RS01400 0.44 -0.3 310,449 - PFLU_RS01400 0.44 -1.5 310,449 - PFLU_RS01400 0.44 -1.3 310,449 - PFLU_RS01400 0.44 -0.8 310,449 - PFLU_RS01400 0.44 -1.9 310,628 - PFLU_RS01400 0.57 -0.6 310,911 + PFLU_RS01400 0.78 -1.8 311,204 - -1.4 311,215 + -0.4 311,215 + -1.0 311,215 + -0.4 311,215 + -1.9 311,215 + -2.7 311,215 + -0.9 311,215 + -0.7 311,215 + -0.2 311,215 + -0.5 311,215 + -1.6 311,215 + -0.3 311,215 + -3.4 311,215 + +0.0 311,215 + -1.6 311,215 + -1.4 311,215 + +1.1 311,215 + -2.2 311,215 + -3.4 311,215 + -0.8 311,215 + -1.7 311,215 + -1.1 311,215 + -1.3 311,215 + -2.1 311,215 + -0.7 311,216 - -1.6 311,216 - -0.2 311,216 - -1.5 311,216 - -1.0 311,216 - -0.7 311,216 - -0.6 311,216 - -0.0 311,216 - +1.7 311,216 - -1.5 311,216 - +0.1 311,216 - +0.3 311,216 - -1.0 311,216 - -1.5 311,216 - +0.5 311,216 - -0.4 311,216 - +0.1 311,216 - +1.1 311,216 - +2.2 311,216 - -0.3 311,216 - +0.3 311,216 - -0.1 311,216 - -1.3 311,216 - -0.8 311,216 - +0.1 311,394 + PFLU_RS01405 0.10 -0.4 311,394 + PFLU_RS01405 0.10 -1.4 311,395 - PFLU_RS01405 0.10 +0.1 311,395 - PFLU_RS01405 0.10 +0.1 311,395 - PFLU_RS01405 0.10 +1.8 311,396 + PFLU_RS01405 0.10 -0.5 311,396 + PFLU_RS01405 0.10 -1.0 311,396 + PFLU_RS01405 0.10 +0.1 311,396 + PFLU_RS01405 0.10 +0.5 311,396 + PFLU_RS01405 0.10 +0.0 311,396 + PFLU_RS01405 0.10 +0.8 311,396 + PFLU_RS01405 0.10 -0.9 311,396 + PFLU_RS01405 0.10 +0.1 311,396 + PFLU_RS01405 0.10 -0.7 311,396 + PFLU_RS01405 0.10 -0.8 311,396 + PFLU_RS01405 0.10 -0.7 311,396 + PFLU_RS01405 0.10 -1.2 311,396 + PFLU_RS01405 0.10 -1.0 311,396 + PFLU_RS01405 0.10 -1.3 311,397 - PFLU_RS01405 0.10 -0.8 311,397 - PFLU_RS01405 0.10 -0.9 311,397 - PFLU_RS01405 0.10 +1.3 311,397 - PFLU_RS01405 0.10 +0.7 311,397 - PFLU_RS01405 0.10 +0.9 311,397 - PFLU_RS01405 0.10 -0.4 311,397 - PFLU_RS01405 0.10 +0.2 311,397 - PFLU_RS01405 0.10 +1.0 311,397 - PFLU_RS01405 0.10 -1.0 311,397 - PFLU_RS01405 0.10 +0.4 311,397 - PFLU_RS01405 0.10 -0.4 311,459 + PFLU_RS01405 0.14 -1.8 311,460 - PFLU_RS01405 0.14 +0.5 311,460 - PFLU_RS01405 0.14 -0.9 311,460 - PFLU_RS01405 0.14 -0.3 312,101 + PFLU_RS01405 0.49 -2.7 312,101 + PFLU_RS01405 0.49 -1.2 312,101 + PFLU_RS01405 0.49 -1.1 312,102 - PFLU_RS01405 0.49 -1.4 312,102 - PFLU_RS01405 0.49 -0.1 312,180 + PFLU_RS01405 0.54 -2.4 312,180 + PFLU_RS01405 0.54 +0.3 312,180 + PFLU_RS01405 0.54 -2.8 312,180 + PFLU_RS01405 0.54 +0.7 312,180 + PFLU_RS01405 0.54 -1.9 312,180 + PFLU_RS01405 0.54 -0.8 312,180 + PFLU_RS01405 0.54 -0.5 312,181 - PFLU_RS01405 0.54 -0.1 312,181 - PFLU_RS01405 0.54 -2.4 312,411 + PFLU_RS01405 0.66 -2.7 312,412 - PFLU_RS01405 0.66 -0.3 312,536 + PFLU_RS01405 0.73 -2.7 312,536 + PFLU_RS01405 0.73 -1.9 312,536 + PFLU_RS01405 0.73 -1.9 312,536 + PFLU_RS01405 0.73 -1.4 312,537 - PFLU_RS01405 0.73 -0.5 312,537 - PFLU_RS01405 0.73 -0.1 312,537 - PFLU_RS01405 0.73 -0.9 312,608 + PFLU_RS01405 0.77 +0.3 312,698 + PFLU_RS01405 0.82 -1.8 312,698 + PFLU_RS01405 0.82 +0.2 312,698 + PFLU_RS01405 0.82 +0.2 312,698 + PFLU_RS01405 0.82 -0.4 312,698 + PFLU_RS01405 0.82 +0.9 312,698 + PFLU_RS01405 0.82 -0.9 312,699 - PFLU_RS01405 0.82 -1.3 312,699 - PFLU_RS01405 0.82 -1.8 312,699 - PFLU_RS01405 0.82 -0.4 312,699 - PFLU_RS01405 0.82 -0.6 312,699 - PFLU_RS01405 0.82 -1.5 312,699 - PFLU_RS01405 0.82 -1.7 312,699 - PFLU_RS01405 0.82 -2.7 312,869 + -1.3 312,869 + -3.0 312,869 + -1.5 312,869 + -2.3 312,870 - -0.3 312,870 - -1.3 312,915 - +0.1 312,917 + -2.2 312,917 + -3.1 312,918 - -1.0 312,918 - -2.8 312,918 - -0.9 312,999 + -1.3 313,052 + +0.5 313,052 + -0.2 313,053 - -0.6 313,053 - +0.0 313,053 - -0.1 313,053 - -1.1 313,053 - +0.0 313,053 - +0.2 313,053 - +1.1 313,053 - +0.0 313,058 + -0.2 313,058 + +0.1 313,058 + -0.9 313,059 - -1.8 313,059 - +0.5
Or see this region's nucleotide sequence