Strain Fitness in Pseudomonas fluorescens FW300-N1B4 around Pf1N1B4_5353

Experiment: Nitrate reduction, replicate C

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Nitrate reduction, replicate C
91,045	+		Pf1N1B4_5351	0.15	+0.1
91,045	+		Pf1N1B4_5351	0.15	+1.1
91,045	+		Pf1N1B4_5351	0.15	-0.3
91,046	-		Pf1N1B4_5351	0.15	+1.7
91,046	-		Pf1N1B4_5351	0.15	+0.1
91,046	-		Pf1N1B4_5351	0.15	+0.7
91,046	-		Pf1N1B4_5351	0.15	+2.1
91,175	+		Pf1N1B4_5351	0.71	+0.1
91,176	-		Pf1N1B4_5351	0.71	-0.3
91,197	+		Pf1N1B4_5351	0.81	-0.3
91,197	+		Pf1N1B4_5351	0.81	+0.9
91,197	+		Pf1N1B4_5351	0.81	-0.6
91,197	+		Pf1N1B4_5351	0.81	-2.1
91,198	-		Pf1N1B4_5351	0.81	+0.4
91,211	+				+2.5
91,211	+				+0.5
91,212	-				-0.3
91,249	+		Pf1N1B4_5352	0.14	-1.3
91,493	+				-2.8
91,493	+				-1.0
91,494	-				-0.9
91,523	+				+0.1
91,523	+				+1.0
91,524	-				-0.2
91,567	+				+0.5
91,625	+				-2.0
91,625	+				-0.5
91,625	+				-0.7
91,626	-				+2.6
91,626	-				-0.6
91,626	-				-0.4
91,792	+				+1.1
91,793	-				-0.6
91,793	-				-0.3
91,793	-				-0.1
91,794	+				+1.1
91,794	+				-0.6
91,794	+				+1.7
91,794	+				-0.2
91,794	+				-0.8
91,794	+				+0.0
91,871	+				-0.1
91,871	+				-0.9
91,871	+				+0.3
91,871	+				-0.1
91,871	+				-0.4
91,871	+				+1.9
91,871	+				-0.5
91,871	+				-2.5
91,871	+				+1.4
91,872	-				-1.3
91,891	+				-0.8
91,891	+				+0.2
91,891	+				-0.3
91,891	+				-0.3
91,891	+				-1.0
91,891	+				+1.1
91,892	-				+0.1
91,907	+				-0.7
91,907	+				-0.2
91,907	+				-0.4
91,907	+				-0.3
91,907	+				-1.9
91,908	-				+1.1
91,908	-				-1.1
91,917	+				-2.3
91,917	+				-0.7
91,917	+				+0.1
91,917	+				-0.2
91,917	+				+1.2
91,917	+				+0.8
91,917	+				+0.5
91,929	+				-1.2
91,929	+				-1.3
91,929	+				+2.5
91,929	+				-0.7
91,929	+				-0.8
91,929	+				-0.1
91,929	+				-2.1
91,929	+				+1.1
91,929	+				-1.1
91,930	-				+0.9
91,930	-				+0.9
91,950	+				-0.9
91,993	+				-1.0
91,993	+				+1.1
91,993	+				+1.6
91,993	+				+0.5
91,994	-				-1.1
92,092	+		Pf1N1B4_5353	0.57	+1.4
92,092	+		Pf1N1B4_5353	0.57	+1.2
92,092	+		Pf1N1B4_5353	0.57	+0.3
92,092	+		Pf1N1B4_5353	0.57	+0.3
92,092	+		Pf1N1B4_5353	0.57	-0.9
92,092	+		Pf1N1B4_5353	0.57	-0.7
92,092	+		Pf1N1B4_5353	0.57	+1.8
92,093	-		Pf1N1B4_5353	0.58	-0.5
92,093	-		Pf1N1B4_5353	0.58	+1.1
92,161	+				-2.5
92,165	+				-1.6
92,165	+				-0.3
92,186	+				+0.5
92,302	+		Pf1N1B4_5354	0.20	-1.7
92,338	+		Pf1N1B4_5354	0.45	-1.8
92,338	+		Pf1N1B4_5354	0.45	-1.1
92,338	+		Pf1N1B4_5354	0.45	-0.7
92,339	-		Pf1N1B4_5354	0.46	-0.3
92,349	+		Pf1N1B4_5354	0.53	+1.3
92,349	+		Pf1N1B4_5354	0.53	+0.1
92,385	+		Pf1N1B4_5354	0.78	+1.0
92,443	+				-2.1
92,443	+				-2.5
92,496	+		Pf1N1B4_5355	0.34	+0.6
92,496	+				+1.5
92,497	-		Pf1N1B4_5355	0.34	+1.5
92,500	+		Pf1N1B4_5355	0.36	-1.9
92,500	+		Pf1N1B4_5355	0.36	-0.4
92,501	-		Pf1N1B4_5355	0.37	+0.6
92,501	-		Pf1N1B4_5355	0.37	+1.1
92,539	+		Pf1N1B4_5355	0.57	+1.9
92,539	+		Pf1N1B4_5355	0.57	-2.4
92,539	+		Pf1N1B4_5355	0.57	-1.1
92,539	+		Pf1N1B4_5355	0.57	+0.1
92,539	+		Pf1N1B4_5355	0.57	+1.8
92,539	+		Pf1N1B4_5355	0.57	-1.9
92,539	+		Pf1N1B4_5355	0.57	-0.3
92,539	+		Pf1N1B4_5355	0.57	+0.2
92,539	+		Pf1N1B4_5355	0.57	+1.9
92,539	+		Pf1N1B4_5355	0.57	+0.0
92,539	+		Pf1N1B4_5355	0.57	+3.4
92,541	+		Pf1N1B4_5355	0.58	+0.6
92,541	+		Pf1N1B4_5355	0.58	+1.0
92,541	+		Pf1N1B4_5355	0.58	-1.3
92,626	+				-0.7
92,626	+				-0.9
92,658	+				-2.0
92,658	+				-3.0
92,677	+				+2.1
92,677	+				+0.4
92,677	+				-2.0
92,678	-				-0.7
92,678	-				-0.5
92,871	+				+0.2
92,871	+				+0.5
92,872	-				-1.0
92,872	-				+1.1
92,934	+				+0.8
92,934	+				+0.6
92,934	+				+0.4
92,934	+				+3.8
92,934	+				+0.2
92,935	-				-1.6
92,935	-				-0.9
92,935	-				-1.0
92,935	-				-1.0
92,935	-				+1.1
92,935	-				+1.1
92,935	-				-0.9
92,935	-				+0.2
92,935	-				+0.7
92,937	+				-1.7
92,937	+				-1.2
92,937	+				+0.3
92,937	+				+1.1
92,937	+				-1.1
92,937	+				-1.1
92,937	+				+0.1
92,937	+				+1.5
92,937	+				+0.6
92,938	-				-2.2
92,938	-				+1.3
92,938	-				+0.2
92,939	+				+0.7
92,939	+				+4.5
92,939	+				-1.2
92,955	-				-1.2
92,955	-				+0.3
92,955	-				+0.1
92,966	-				-0.9
92,995	+				-1.7
92,996	-				+0.2
92,996	-				-2.0
93,001	+				-1.3
93,001	+				-1.5
93,036	+		Pf1N1B4_5356	0.24	-0.1
93,114	+		Pf1N1B4_5356	0.56	-0.7
93,147	+		Pf1N1B4_5356	0.69	-2.9
93,147	+		Pf1N1B4_5356	0.69	+0.6