Strain Fitness in Pseudomonas stutzeri RCH2 around Psest_0523

Experiment: propionate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsest_0521 and Psest_0522 are separated by 62 nucleotidesPsest_0522 and Psest_0523 are separated by 93 nucleotidesPsest_0523 and Psest_0524 are separated by 37 nucleotidesPsest_0524 and Psest_0525 are separated by 43 nucleotides Psest_0521: Psest_0521 - lytic murein transglycosylase, at 573,615 to 574,913 _0521 Psest_0522: Psest_0522 - Uncharacterized protein conserved in bacteria, at 574,976 to 575,134 _0522 Psest_0523: Psest_0523 - DNA polymerase III, delta subunit, at 575,228 to 576,256 _0523 Psest_0524: Psest_0524 - Rare lipoprotein B, at 576,294 to 576,899 _0524 Psest_0525: Psest_0525 - leucyl-tRNA synthetase, eubacterial and mitochondrial family, at 576,943 to 579,549 _0525 Position (kb) 575 576 577Strain fitness (log2 ratio) -2 -1 0 1 2at 574.231 kb on + strand, within Psest_0521at 574.231 kb on + strand, within Psest_0521at 574.231 kb on + strand, within Psest_0521at 574.231 kb on + strand, within Psest_0521at 574.231 kb on + strand, within Psest_0521at 574.231 kb on + strand, within Psest_0521at 574.231 kb on + strand, within Psest_0521at 574.231 kb on + strand, within Psest_0521at 574.231 kb on + strand, within Psest_0521at 574.231 kb on + strand, within Psest_0521at 574.231 kb on + strand, within Psest_0521at 574.231 kb on + strand, within Psest_0521at 574.231 kb on + strand, within Psest_0521at 574.231 kb on + strand, within Psest_0521at 574.231 kb on + strand, within Psest_0521at 574.232 kb on - strand, within Psest_0521at 574.232 kb on - strand, within Psest_0521at 574.232 kb on - strand, within Psest_0521at 574.232 kb on - strand, within Psest_0521at 574.232 kb on - strand, within Psest_0521at 574.232 kb on - strand, within Psest_0521at 574.232 kb on - strand, within Psest_0521at 574.232 kb on - strand, within Psest_0521at 574.232 kb on - strand, within Psest_0521at 574.232 kb on - strand, within Psest_0521at 574.232 kb on - strand, within Psest_0521at 574.232 kb on - strand, within Psest_0521at 574.232 kb on - strand, within Psest_0521at 574.232 kb on - strand, within Psest_0521at 574.571 kb on - strand, within Psest_0521at 574.677 kb on - strand, within Psest_0521at 574.677 kb on - strand, within Psest_0521at 574.772 kb on + strand, within Psest_0521at 574.909 kb on + strandat 574.909 kb on + strandat 574.909 kb on + strandat 574.909 kb on + strandat 574.909 kb on + strandat 574.909 kb on + strandat 574.909 kb on + strandat 574.909 kb on + strandat 574.909 kb on + strandat 574.909 kb on + strandat 574.910 kb on - strandat 574.910 kb on - strandat 574.910 kb on - strandat 574.910 kb on - strandat 574.910 kb on - strandat 574.910 kb on - strandat 574.951 kb on - strandat 574.951 kb on - strandat 574.951 kb on - strandat 575.177 kb on + strandat 575.178 kb on - strandat 575.178 kb on - strandat 576.295 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction propionate (C)
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574,231 + Psest_0521 0.47 -1.5
574,231 + Psest_0521 0.47 -1.0
574,231 + Psest_0521 0.47 +0.7
574,231 + Psest_0521 0.47 -0.3
574,231 + Psest_0521 0.47 +1.2
574,231 + Psest_0521 0.47 +1.4
574,231 + Psest_0521 0.47 -1.0
574,231 + Psest_0521 0.47 -0.1
574,231 + Psest_0521 0.47 +1.3
574,231 + Psest_0521 0.47 -0.2
574,231 + Psest_0521 0.47 +0.2
574,231 + Psest_0521 0.47 -1.4
574,231 + Psest_0521 0.47 -0.6
574,231 + Psest_0521 0.47 -1.4
574,231 + Psest_0521 0.47 -0.3
574,232 - Psest_0521 0.47 -1.0
574,232 - Psest_0521 0.47 -0.1
574,232 - Psest_0521 0.47 -0.4
574,232 - Psest_0521 0.47 -1.3
574,232 - Psest_0521 0.47 -1.7
574,232 - Psest_0521 0.47 -0.3
574,232 - Psest_0521 0.47 -0.4
574,232 - Psest_0521 0.47 -0.2
574,232 - Psest_0521 0.47 -0.8
574,232 - Psest_0521 0.47 -0.8
574,232 - Psest_0521 0.47 -1.2
574,232 - Psest_0521 0.47 -0.6
574,232 - Psest_0521 0.47 +2.6
574,232 - Psest_0521 0.47 +2.0
574,571 - Psest_0521 0.74 +1.1
574,677 - Psest_0521 0.82 -0.2
574,677 - Psest_0521 0.82 +1.8
574,772 + Psest_0521 0.89 +0.2
574,909 + +0.9
574,909 + -0.1
574,909 + -1.6
574,909 + -0.4
574,909 + +0.1
574,909 + +0.2
574,909 + -2.7
574,909 + -1.0
574,909 + -1.6
574,909 + +0.7
574,910 - +0.2
574,910 - -0.0
574,910 - +0.5
574,910 - -1.1
574,910 - -1.2
574,910 - -1.0
574,951 - -1.6
574,951 - -0.2
574,951 - +0.2
575,177 + -0.5
575,178 - -0.4
575,178 - -0.7
576,295 + +0.5

Or see this region's nucleotide sequence